Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4h05
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 49 4e-06
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 31 0.84
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090 31 1.1
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 30 1.9
06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516 30 1.9
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 30 1.9
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 29 2.6
06_03_0300 + 19299378-19299688,19299839-19300268 29 2.6
07_01_1134 + 10614565-10615821 29 4.5
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649... 28 5.9
04_03_0075 + 10726807-10727721,10728756-10729496 28 5.9
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 28 5.9
03_01_0320 - 2510907-2512190 28 7.8
02_02_0723 - 13341390-13342025 28 7.8
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Frame = +3
Query: 249 DGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPPRTLLKE-LFRFCHDYQNKG 419
DG ND L C+D++R CAR + CK+ H P + ++ C D
Sbjct: 95 DGKRRRHND---LNVEVCRDFLRDRCARADIECKYAHPHPTVAVDRDSKVTACADSLRNN 151
Query: 420 CYR-TNCKFLHSTVEDEENFYHTGIFPRDSRNVAVCQAYIHGSCSN--KDCKYKHPSDL 587
C+R C++ H +E+ + I D + VC+ + G CS +C++ H S L
Sbjct: 152 CFRGRTCRYYHPPPHIQESLLRS-IGVEDPKVKMVCRDFTRGRCSRSANECRFLHHSPL 209
Score = 39.5 bits (88), Expect = 0.002
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Frame = +3
Query: 267 DNDKVILASRFCKDYIRGSCAR-ENCKFIHEKP--PRTLLKELF-------RFCHDYQNK 416
D D + A C D +R +C R C++ H P +LL+ + C D+
Sbjct: 136 DRDSKVTA---CADSLRNNCFRGRTCRYYHPPPHIQESLLRSIGVEDPKVKMVCRDFTRG 192
Query: 417 GCYRT--NCKFLH-STVEDEENFYHTGIFPRDSRNVAVCQAYIHGSCSNKDCKYKH 575
C R+ C+FLH S +ED VCQ ++ G C K C+Y H
Sbjct: 193 RCSRSANECRFLHHSPLED---------------CAIVCQDFLRGRCDRKSCRYSH 233
Score = 35.1 bits (77), Expect = 0.051
Identities = 22/103 (21%), Positives = 44/103 (42%)
Frame = +3
Query: 300 CKDYIRGSCARENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVEDEENFY 479
C+D++RG C R++C++ H + + Y + + +
Sbjct: 216 CQDFLRGRCDRKSCRYSHVMA-HPMPPPMRDIPMQYPDMVYMPPPAPLGVPMMMPPPSA- 273
Query: 480 HTGIFPRDSRNVAVCQAYIHGSCSNKDCKYKHPSDLISNEACN 608
F ++ V VC+ Y+ C+ + C++ HP ++NEA N
Sbjct: 274 -PAAFSGNNYGVEVCRDYLKNMCNRESCRFAHPD--LNNEATN 313
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 501 LWGKFLYDKNFLHLLRCCVRTCSLFYSNL-CFDSRGRNETI 382
+W F+Y FL L C TC+L S L C D G E +
Sbjct: 396 VWSCFVYSVPFLVTLISCCMTCALLLSRLVCDDISGGQENL 436
>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
Length = 625
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 342 YNSREHSYHEYNLYRIC*QELLYRC 268
Y SR H + E LYR+C LL RC
Sbjct: 33 YESRRHIWDETYLYRVCSDGLLRRC 57
>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 501 DSRNVAVCQAYIHGSCSNKDCKYKH 575
D V +C ++ G CSN CK H
Sbjct: 1856 DRAKVTICTKFLKGLCSNTSCKLTH 1880
>06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516
Length = 318
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 345 IYNSREHSYHEYNLYRIC*QELLYRC 268
IY SR H ++ LYR+C LL RC
Sbjct: 119 IYKSRGHLWYAPYLYRVCSDGLLRRC 144
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 10/120 (8%)
Frame = +3
Query: 321 SCAREN-CKFIHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVEDEENFYHTGI-- 491
+C + N C F H R ++ C + N C C F H ++ TG+
Sbjct: 46 TCKKGNECDFRHSDNARMNPRD----CWYWLNSNCLNPKCPFRHPPIDGMFGAPTTGMPA 101
Query: 492 -----FPRDS-RNVAVCQAYIHGSCSNKD-CKYKHPSDLISNEACNEVVTIHNITQPQFR 650
P +S + + C + G+C D C + H + N +VV + ++ Q +
Sbjct: 102 VSSHYAPFNSGKQLVPCYYFKKGNCLKGDRCAFYHGPQSVGNNPSEQVVKVSSLPLEQLQ 161
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/20 (40%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 CKDYIRGSCAR-ENCKFIHE 356
C D+++G C+R NC+++H+
Sbjct: 320 CHDFVKGRCSRGANCRYVHD 339
>06_03_0300 + 19299378-19299688,19299839-19300268
Length = 246
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 345 IYNSREHSYHEYNLYRIC*QELLYRC 268
IY SR H + LYR+C LL RC
Sbjct: 47 IYESRRHLWDAPYLYRVCSDGLLRRC 72
>07_01_1134 + 10614565-10615821
Length = 418
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 372 LLKELFRFCHDYQNKGCYRTNCKFLHS 452
+L+E FCHD + +G Y NC ++++
Sbjct: 74 MLEEDVPFCHDCREQGHYALNCPWVYA 100
>06_03_0049 +
15961706-15962017,15962952-15963851,15964769-15964913,
15964969-15965705
Length = 697
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 342 YNSREHSYHEYNLYRIC*QELLYRC 268
Y S H + E LYR+C LL RC
Sbjct: 32 YESHRHIWDEPYLYRVCSDGLLRRC 56
>04_03_0075 + 10726807-10727721,10728756-10729496
Length = 551
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 342 YNSREHSYHEYNLYRIC*QELLYRC 268
Y SR H + E LY +C LL RC
Sbjct: 400 YESRRHIWDEAYLYTVCSDGLLRRC 424
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 513 VAVCQAYIHGSCSNKD-CKYKH-PSDLISNEAC 605
V VC Y+HG C + CK+ H + L ++ C
Sbjct: 432 VKVCHFYLHGKCQQGNLCKFSHDTTPLTKSKPC 464
>03_01_0320 - 2510907-2512190
Length = 427
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 390 RFCHDYQNKGCYRTNCKFLHSTVED 464
+ CH +++ C R C+FLH+ D
Sbjct: 33 KVCHYWKSGRCSRNPCRFLHTDAPD 57
>02_02_0723 - 13341390-13342025
Length = 211
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 345 IYNSREHSYHEYNLYRIC*QELLYRC 268
IY SR H + LYR+C LL RC
Sbjct: 34 IYESRMHLWDLPYLYRVCSDVLLRRC 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,755,922
Number of Sequences: 37544
Number of extensions: 316583
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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