Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4h05
(671 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF001626-1|AAC47758.1| 316|Drosophila melanogaster muscleblind ... 38 0.009
AF001625-1|AAC47757.1| 203|Drosophila melanogaster muscleblind ... 38 0.009
AF001536-1|AAC01949.1| 243|Drosophila melanogaster Muscleblind ... 38 0.009
AE013599-2447|AAO41359.1| 203|Drosophila melanogaster CG33197-P... 38 0.009
AE013599-2446|AAO41358.1| 297|Drosophila melanogaster CG33197-P... 38 0.009
AE013599-2445|AAO41357.1| 243|Drosophila melanogaster CG33197-P... 38 0.009
BT010061-1|AAQ22530.1| 597|Drosophila melanogaster LD15332p pro... 33 0.27
AE014296-1464|AAF50410.2| 597|Drosophila melanogaster CG6694-PA... 33 0.27
AE013599-2448|AAO41360.1| 84|Drosophila melanogaster CG33197-P... 33 0.27
AF001422-1|AAC01948.1| 84|Drosophila melanogaster Cys3His-type... 32 0.62
BT011018-1|AAR30178.1| 520|Drosophila melanogaster RE58902p pro... 29 4.4
AE014134-1300|AAF52532.1| 787|Drosophila melanogaster CG6739-PA... 29 4.4
>AF001626-1|AAC47758.1| 316|Drosophila melanogaster muscleblind B
protein.
Length = 316
Score = 38.3 bits (85), Expect = 0.009
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 228 MINLLNMDGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPPRTLLKELFRFCH 401
M N++NM+ ++N D L C+++ R C+R++ CKF H + C+
Sbjct: 1 MANVVNMNSLLNG-KDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACY 59
Query: 402 DYQNKGCYRTN--CKFLH 449
D C R CK+ H
Sbjct: 60 DSIKGRCNRDKPPCKYFH 77
>AF001625-1|AAC47757.1| 203|Drosophila melanogaster muscleblind A
protein.
Length = 203
Score = 38.3 bits (85), Expect = 0.009
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 228 MINLLNMDGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPPRTLLKELFRFCH 401
M N++NM+ ++N D L C+++ R C+R++ CKF H + C+
Sbjct: 1 MANVVNMNSLLNG-KDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACY 59
Query: 402 DYQNKGCYRTN--CKFLH 449
D C R CK+ H
Sbjct: 60 DSIKGRCNRDKPPCKYFH 77
>AF001536-1|AAC01949.1| 243|Drosophila melanogaster Muscleblind
isoform C protein.
Length = 243
Score = 38.3 bits (85), Expect = 0.009
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 228 MINLLNMDGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPPRTLLKELFRFCH 401
M N++NM+ ++N D L C+++ R C+R++ CKF H + C+
Sbjct: 1 MANVVNMNSLLNG-KDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACY 59
Query: 402 DYQNKGCYRTN--CKFLH 449
D C R CK+ H
Sbjct: 60 DSIKGRCNRDKPPCKYFH 77
>AE013599-2447|AAO41359.1| 203|Drosophila melanogaster CG33197-PA,
isoform A protein.
Length = 203
Score = 38.3 bits (85), Expect = 0.009
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 228 MINLLNMDGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPPRTLLKELFRFCH 401
M N++NM+ ++N D L C+++ R C+R++ CKF H + C+
Sbjct: 1 MANVVNMNSLLNG-KDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACY 59
Query: 402 DYQNKGCYRTN--CKFLH 449
D C R CK+ H
Sbjct: 60 DSIKGRCNRDKPPCKYFH 77
>AE013599-2446|AAO41358.1| 297|Drosophila melanogaster CG33197-PB,
isoform B protein.
Length = 297
Score = 38.3 bits (85), Expect = 0.009
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 228 MINLLNMDGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPPRTLLKELFRFCH 401
M N++NM+ ++N D L C+++ R C+R++ CKF H + C+
Sbjct: 1 MANVVNMNSLLNG-KDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACY 59
Query: 402 DYQNKGCYRTN--CKFLH 449
D C R CK+ H
Sbjct: 60 DSIKGRCNRDKPPCKYFH 77
>AE013599-2445|AAO41357.1| 243|Drosophila melanogaster CG33197-PD,
isoform D protein.
Length = 243
Score = 38.3 bits (85), Expect = 0.009
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 228 MINLLNMDGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPPRTLLKELFRFCH 401
M N++NM+ ++N D L C+++ R C+R++ CKF H + C+
Sbjct: 1 MANVVNMNSLLNG-KDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACY 59
Query: 402 DYQNKGCYRTN--CKFLH 449
D C R CK+ H
Sbjct: 60 DSIKGRCNRDKPPCKYFH 77
>BT010061-1|AAQ22530.1| 597|Drosophila melanogaster LD15332p
protein.
Length = 597
Score = 33.5 bits (73), Expect = 0.27
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 300 CKDYIRGSCARENCKFIHEK 359
C+ Y+RG C RE+C ++H+K
Sbjct: 430 CRYYLRGVCVREDCPYLHKK 449
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 300 CKDYIRGSCARENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVEDE 467
C ++RG C + C H TL E C Y C R +C +LH + +
Sbjct: 403 CVSFLRGECTKPKCLLSHNV---TL--EKMPVCRYYLRGVCVREDCPYLHKKLSSK 453
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 519 VCQAYIHGSCSNKDCKYKHPSDLISNEACNEVV 617
VC+ Y+ G C +DC Y H E C + V
Sbjct: 429 VCRYYLRGVCVREDCPYLHKKLSSKTEICIDFV 461
Score = 30.3 bits (65), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 501 DSRNVAVCQAYIHGSCSNKDCKYKHPSDLISNEAC 605
D R VA+C +++ G C+ C H L C
Sbjct: 396 DKRQVAICVSFLRGECTKPKCLLSHNVTLEKMPVC 430
>AE014296-1464|AAF50410.2| 597|Drosophila melanogaster CG6694-PA
protein.
Length = 597
Score = 33.5 bits (73), Expect = 0.27
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 300 CKDYIRGSCARENCKFIHEK 359
C+ Y+RG C RE+C ++H+K
Sbjct: 430 CRYYLRGVCVREDCPYLHKK 449
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 300 CKDYIRGSCARENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVEDE 467
C ++RG C + C H TL E C Y C R +C +LH + +
Sbjct: 403 CVSFLRGECTKPKCLLSHNV---TL--EKMPVCRYYLRGVCVREDCPYLHKKLSSK 453
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 519 VCQAYIHGSCSNKDCKYKHPSDLISNEACNEVV 617
VC+ Y+ G C +DC Y H E C + V
Sbjct: 429 VCRYYLRGVCVREDCPYLHKKLSSKTEICIDFV 461
Score = 30.3 bits (65), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 501 DSRNVAVCQAYIHGSCSNKDCKYKHPSDLISNEAC 605
D R VA+C +++ G C+ C H L C
Sbjct: 396 DKRQVAICVSFLRGECTKPKCLLSHNVTLEKMPVC 430
>AE013599-2448|AAO41360.1| 84|Drosophila melanogaster CG33197-PC,
isoform C protein.
Length = 84
Score = 33.5 bits (73), Expect = 0.27
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 228 MINLLNMDGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPP 365
M N++NM+ ++N D L C+++ R C+R++ CKF H PP
Sbjct: 1 MANVVNMNSLLNG-KDSRWLQLEVCREFQRNKCSRQDTECKFAH--PP 45
>AF001422-1|AAC01948.1| 84|Drosophila melanogaster Cys3His-type
zinc finger protein protein.
Length = 84
Score = 32.3 bits (70), Expect = 0.62
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 228 MINLLNMDGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPP 365
M N++NM+ ++N D L C+++ R C+R++ CKF H PP
Sbjct: 1 MANVVNMNSLLNG-KDWRWLQLEVCREFQRNKCSRQDTECKFAH--PP 45
>BT011018-1|AAR30178.1| 520|Drosophila melanogaster RE58902p
protein.
Length = 520
Score = 29.5 bits (63), Expect = 4.4
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +3
Query: 411 NKGCYRTNCKFLHSTVEDEENFYHTGIFPRDSRNVAVCQAYIHGSCSNKDCKY 569
N GC T ++ + F G PRD+ ++A + I +CS + ++
Sbjct: 311 NSGCQSTMLPMCQGVLDYDLTFNREGAAPRDAVSMAAYDSLIRANCSVRAAEF 363
>AE014134-1300|AAF52532.1| 787|Drosophila melanogaster CG6739-PA
protein.
Length = 787
Score = 29.5 bits (63), Expect = 4.4
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +3
Query: 411 NKGCYRTNCKFLHSTVEDEENFYHTGIFPRDSRNVAVCQAYIHGSCSNKDCKY 569
N GC T ++ + F G PRD+ ++A + I +CS + ++
Sbjct: 311 NSGCQSTMLPMCQGVLDYDLTFNREGAAPRDAVSMAAYDSLIRANCSVRAAEF 363
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,796,486
Number of Sequences: 53049
Number of extensions: 597861
Number of successful extensions: 2228
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2228
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -