Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4h05
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 60 2e-09
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U67957-1|AAB07587.2| 324|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z70286-3|CAA94296.1| 298|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical pr... 29 3.0
U58750-12|AAB00652.2| 266|Caenorhabditis elegans Hypothetical p... 29 3.0
AL021488-4|CAA16363.2| 531|Caenorhabditis elegans Hypothetical ... 28 6.9
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 300 CKDYIRGSCAR-ENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVEDEENF 476
C+D+++ C R CKF H + + FC DYQN+GC R NC+F+H+ ++ E +
Sbjct: 59 CRDFLKNICNRGSRCKFYHPSEAPPISDHDYNFCIDYQNRGCQRDNCRFVHAPRDEVERY 118
Query: 477 YHT 485
T
Sbjct: 119 KTT 121
Score = 31.9 bits (69), Expect = 0.43
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 297 FCKDYIRGSCARENCKFIH 353
FC DY C R+NC+F+H
Sbjct: 91 FCIDYQNRGCQRDNCRFVH 109
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 45.6 bits (103), Expect = 3e-05
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Frame = +3
Query: 300 CKDYIRGSCAR-ENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVED---- 464
CK ++RG C + + C+F+HE T + E F F + C C F H E
Sbjct: 82 CKHWLRGLCKKGDQCEFLHEYD-LTKMPECFFFS---KYSACSNRECPFRHIDPETKMKD 137
Query: 465 ----EENFYHTGIFPRDS-RNVAVCQAYIHGSC-SNKDCKYKHPS 581
+ F G + + R AVC Y+ G C DC+Y HPS
Sbjct: 138 CPWYDRGFCRHGPYCKHRHRRRAVCPNYLAGFCLQGPDCQYAHPS 182
>U67957-1|AAB07587.2| 324|Caenorhabditis elegans Hypothetical
protein K02H8.1 protein.
Length = 324
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 300 CKDYIRGSCAR--ENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRTN--CKFLH 449
C++++RG CAR + CKF H P + + C+D C R N CK+LH
Sbjct: 44 CREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSIKGRCTRENPKCKYLH 97
Score = 30.7 bits (66), Expect = 0.99
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Frame = +3
Query: 498 RDSR--NVAVCQAYIHGSC--SNKDCKYKHP 578
+DSR V VC+ ++ G C S+++CK+ HP
Sbjct: 34 KDSRWLQVEVCREFLRGQCARSDQECKFAHP 64
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 300 CKDYIRGSCAREN--CKFIHEKPPRTLLKEL 386
C D I+G C REN CK++H PP+ + +L
Sbjct: 78 CYDSIKGRCTRENPKCKYLH--PPQHIKDQL 106
>Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical
protein W05B10.2 protein.
Length = 200
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 522 CQAYIHGSCSNKD-CKYKHPSDLISNEACNEV 614
C+ Y+ G C D C++ HP S++A NEV
Sbjct: 139 CKNYLKGKCRFGDKCRFSHPVHNRSSDAVNEV 170
>Z70286-3|CAA94296.1| 298|Caenorhabditis elegans Hypothetical
protein K08C7.7 protein.
Length = 298
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 348 IHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVEDEEN 473
I E PP +L L +C++ N CK LH+ +E+ N
Sbjct: 8 ILELPPELILHVLKNYCYEELND--ITVTCKTLHALIEENRN 47
>Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical
protein ZK20.1 protein.
Length = 420
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 543 SCSNKDCKYKHPSDLISNEACNEVVTIHNITQPQFRIPLSTTL 671
SC +C++ D++S+ + I + R+PLST+L
Sbjct: 253 SCKTTECRFIEDGDIVSSFFDRPSIRIQSDNTVSLRLPLSTSL 295
>U58750-12|AAB00652.2| 266|Caenorhabditis elegans Hypothetical
protein F55G1.12 protein.
Length = 266
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 450 STVEDEENFYHTGIFPRDSRNVAVCQAYIHGSCSNKDCKYKHPSDLIS 593
++V + +++Y+ G + D + Q ++G C D +Y P+D IS
Sbjct: 85 NSVSEVKSYYYDGDYTTDGCLRSCYQDVVNGDCGCMDPRYPMPNDGIS 132
>AL021488-4|CAA16363.2| 531|Caenorhabditis elegans Hypothetical
protein Y45F10A.7a protein.
Length = 531
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 97 IRPHHLEFFGFDEYRNNNNNE 159
I PH + GF+EY NNN+
Sbjct: 112 IVPHPMNAIGFEEYETENNNK 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,741
Number of Sequences: 27780
Number of extensions: 329816
Number of successful extensions: 1020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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