Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h05
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    28   0.070
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     28   0.070
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 525 QAYIHGSCSNKDCKYK-HPSDLISNEACNEVV 617
           +A +  SC  KD  Y+ HP +L+  EAC + V
Sbjct: 95  RALVVVSCVTKDQPYRPHPHNLVGKEACKQGV 126


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 525 QAYIHGSCSNKDCKYK-HPSDLISNEACNEVV 617
           +A +  SC  KD  Y+ HP +L+  EAC + V
Sbjct: 95  RALVVVSCVTKDQPYRPHPHNLVGKEACKQGV 126


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +3

Query: 450 STVEDEENFYHTGIFPRDSRNVAVCQAYIHGSCSNKDCKYKHPSDL 587
           + V     FYH  +    SR+ A     IH S       Y H +D+
Sbjct: 112 AAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQTDV 157


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 617 YYFITSFVADQIRRVFVFTIFIRTRSMYISLTNRDIS*ISGENSCMIKIFFIFY 456
           +  I SF A+      V TI   T   YI++ +  IS    + S  +K   + +
Sbjct: 126 FCIIQSFAAETSANATVLTITAFTVERYIAICHPFISHTMSKLSRAVKFIIVIW 179


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 HHLEFFGFDEYRNNNNNEWISICEKCY 186
           ++ ++  ++ Y N NNN + +  +K Y
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNNYNKKLY 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,534
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)