Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4g13
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    64   1e-11
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   4.6  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   6.1  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   6.1  

>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 33/71 (46%), Positives = 47/71 (66%)
 Frame = +3

Query: 417 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 596
           T++ +K+  FD   K  +IKEVK LL G +LV AKKFVES P V+K +I K++AE +K  
Sbjct: 137 TTWNLKLESFDAGSKAKVIKEVKSLL-GLSLVDAKKFVESAPKVLKENILKEDAEAIKSK 195

Query: 597 LTKVGAIIEIE 629
           L K+   + +E
Sbjct: 196 LEKLSCKVVLE 206


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 492 LEGFNLVQAKKFVESVPTVVKADISKD 572
           ++GF + + KK  + +PTV  AD  KD
Sbjct: 533 IDGFFVAKLKKISDKIPTVNVADDMKD 559


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 446 KFRHFNCKTGLHSFRGCLXFINSSRWSHCE 357
           KF     +TG H   G L ++ SS W+  E
Sbjct: 531 KFLKMGLETGWHGKFGSLNYVTSSTWARQE 560


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 453 KQKVALIKEVKGLLEGFNL--VQAKKFVESVPTV 548
           KQ VA IKE+  LLE F +  +    F + +PT+
Sbjct: 142 KQAVASIKELNSLLENFGIPALSPIPFYKLIPTL 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,751
Number of Sequences: 5004
Number of extensions: 26316
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)