Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4g13
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1338 - 25877235-25877738                                         57   2e-08
03_05_1038 - 29879965-29880492                                         54   1e-07
02_01_0745 - 5550472-5551053                                           53   2e-07
05_07_0049 - 27327804-27328400                                         50   1e-06
05_07_0157 - 28079181-28079720                                         46   4e-05
05_01_0488 - 4070506-4072277,4072455-4072557                           30   2.1  

>07_03_1338 - 25877235-25877738
          Length = 167

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 28/71 (39%), Positives = 44/71 (61%)
 Frame = +3

Query: 417 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 596
           TSF VK+ K++   K+ +IKEV+ + +   L +AK+ VE  P VV++ + K+EAE L   
Sbjct: 98  TSFDVKIEKYEAAAKIKIIKEVRAVTD-LGLKEAKELVEKAPVVVRSGLPKEEAEALAAK 156

Query: 597 LTKVGAIIEIE 629
           L   GA + +E
Sbjct: 157 LKAAGAAVALE 167


>03_05_1038 - 29879965-29880492
          Length = 175

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/70 (38%), Positives = 42/70 (60%)
 Frame = +3

Query: 420 SFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEAL 599
           +F VK+  FD   K+ +IKE++       L +AK+ VE  P V+KA + K+EAE + E +
Sbjct: 107 AFDVKLEGFDAAAKLKIIKELRAFTN-LGLKEAKELVEKAPAVLKAGVPKEEAESIAEKM 165

Query: 600 TKVGAIIEIE 629
             +GA I +E
Sbjct: 166 RAIGAKIVLE 175


>02_01_0745 - 5550472-5551053
          Length = 193

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/71 (35%), Positives = 42/71 (59%)
 Frame = +3

Query: 417 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 596
           T F VK+ KFD   K+ +IKE++   +   L +AK+ VE  P ++K  ++K+EAE + E 
Sbjct: 124 TVFDVKLEKFDAAAKIKIIKEIRTFTD-LGLKEAKELVEKAPVILKQSLTKEEAEAIIEK 182

Query: 597 LTKVGAIIEIE 629
           +   G +  +E
Sbjct: 183 IKVAGGVAVME 193


>05_07_0049 - 27327804-27328400
          Length = 198

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/71 (32%), Positives = 42/71 (59%)
 Frame = +3

Query: 417 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 596
           T F +++  FD   K+ +IKE++   +   L +AK+ VE  P V+K  +SK+EA  + + 
Sbjct: 129 TVFELRLEAFDAASKIKVIKEIRSFTD-LGLKEAKELVEKAPAVIKGGVSKEEARTIIDK 187

Query: 597 LTKVGAIIEIE 629
           +  VGA + ++
Sbjct: 188 MKAVGAKVVMD 198


>05_07_0157 - 28079181-28079720
          Length = 179

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 25/70 (35%), Positives = 39/70 (55%)
 Frame = +3

Query: 417 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 596
           T F V + +     ++A IK V+ L     L +AK  +E +P   K  +SK+EAE+ K+ 
Sbjct: 110 TEFDVVIEEVPSSARIATIKVVRALTN-LALKEAKDLIEGLPKKAKEAVSKEEAEEAKKQ 168

Query: 597 LTKVGAIIEI 626
           L +VGA + I
Sbjct: 169 LEEVGAKVSI 178


>05_01_0488 - 4070506-4072277,4072455-4072557
          Length = 624

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/66 (27%), Positives = 41/66 (62%)
 Frame = +3

Query: 432 KMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEALTKVG 611
           ++++ ++KQ+V+ + E   L +  + V+++K  E++  VV   ++KDE ++LKE++    
Sbjct: 215 ELSEHEEKQQVSDV-ETSSLQKDLDEVKSEK--EALEAVVL--VNKDEIDRLKESMVSAA 269

Query: 612 AIIEIE 629
              E+E
Sbjct: 270 KQFEVE 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,448
Number of Sequences: 37544
Number of extensions: 152647
Number of successful extensions: 345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)