Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4g08
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 40 0.003
04_04_1653 + 35070026-35070064,35070358-35070408,35070490-350705... 36 0.046
08_02_1214 + 25333861-25334083,25334916-25335159,25335258-253353... 31 0.99
09_06_0215 - 21621889-21621949,21622275-21622333,21622442-216225... 31 1.3
02_02_0139 + 7122880-7122979,7123328-7123560,7123961-7124032,712... 31 1.3
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 30 1.7
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 29 5.3
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 29 5.3
06_02_0083 - 11539955-11540257,11540594-11540742,11540938-115410... 29 5.3
04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991... 29 5.3
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 7.0
04_01_0007 + 168423-168485,168590-168697,169662-169741,170497-17... 28 7.0
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 28 7.0
01_03_0097 + 12534273-12534494,12535970-12536056 28 7.0
10_06_0164 + 11364436-11367280,11367357-11367715 28 9.2
10_01_0055 - 785172-785997,786859-787394,787478-787695,787789-78... 28 9.2
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 416 GEWAIPGGMVDPGEKVSETAIREFKEEALNSLSLADKIQWEKEIDEFFSEGEVIY 580
G W P G+V+PGE ++ A+RE KEE + + + + FF + ++ +
Sbjct: 145 GVWKFPTGVVEPGEDINLGAVREVKEETGIDTEFVEVLAFRQSHKAFFDKSDLFF 199
>04_04_1653 +
35070026-35070064,35070358-35070408,35070490-35070582,
35070758-35070855,35072437-35072551,35072628-35072720
Length = 162
Score = 35.5 bits (78), Expect = 0.046
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 377 PILQFIAIKRGDTGEWAIPGGMVDPGEKVSETAIREFKEE 496
PIL F A + W +P G +D GE E A RE +EE
Sbjct: 11 PILIFTASRIDIANTWQMPQGGIDAGEDPREAAFRELREE 50
>08_02_1214 +
25333861-25334083,25334916-25335159,25335258-25335345,
25335731-25335953,25336073-25336164,25336293-25336544
Length = 373
Score = 31.1 bits (67), Expect = 0.99
Identities = 20/86 (23%), Positives = 43/86 (50%)
Frame = +2
Query: 344 NGNMAVGVNNKPILQFIAIKRGDTGEWAIPGGMVDPGEKVSETAIREFKEEALNSLSLAD 523
N A + ++ ++ + R DT +W I G+V+PG+++ E N+ S +
Sbjct: 263 NAPAAELITSREVINSQYVFRFDTKDWKIMEGVVEPGDELMPHRQNNIGEHYNNAKSYSA 322
Query: 524 KIQWEKEIDEFFSEGEVIYQGYVDDC 601
+ +++ DE F++GE + + + C
Sbjct: 323 S-EPQRKRDE-FAQGEGMDETLIKPC 346
>09_06_0215 -
21621889-21621949,21622275-21622333,21622442-21622582,
21622669-21622804,21623266-21623342,21623594-21623725,
21624915-21624938,21626147-21626365,21626401-21626718
Length = 388
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 416 GEWAIPGGMVDPGEKVSETAIREFKEEA 499
G W +P G ++ GE +E A RE EEA
Sbjct: 255 GLWTLPAGYLEVGESAAEGASRETLEEA 282
>02_02_0139 +
7122880-7122979,7123328-7123560,7123961-7124032,
7124257-7124334,7124529-7124579,7124654-7124703,
7124807-7124915,7125023-7125223
Length = 297
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 422 WAIPGGMVDPGEKVSETAIREFKEEALNS 508
W IP G +D E + AIRE +EE NS
Sbjct: 152 WKIPTGFIDKFEDLFSGAIREVREETGNS 180
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 413 TGEWAIPGGMVDPGE-KVSETAIREFKEE 496
+GE ++PGG V+ G+ + TA+RE KEE
Sbjct: 96 SGEVSLPGGKVEEGDADATATALREAKEE 124
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 413 TGEWAIPGGMVDPGE-KVSETAIREFKEE 496
+GE A+PGG + G+ + TA+RE KEE
Sbjct: 78 SGEVALPGGKAEEGDADDAATALREAKEE 106
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 65 TEYKQYNPPNYTFPGLHGKPYADPEIGDPNFEPLW-NSIDGNISRV 199
++ +Q P Y+ P +HG +GDP + LW + G R+
Sbjct: 304 SQLQQIARPLYSNPPVHGALIVSTILGDPELKSLWLKEVKGMADRI 349
>06_02_0083 -
11539955-11540257,11540594-11540742,11540938-11541025,
11541151-11541462,11541554-11541709,11541941-11542156,
11542251-11542508,11542740-11542943,11543052-11543096
Length = 576
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 428 IPGGMVDPGEKVS--ETAIREFKEEALNSLSLADKIQ-WEKEIDE 553
I G ++P E ++ E+ I + KEEAL+ + DK++ W +E
Sbjct: 344 IEAGNIEPSELIADMESQISKAKEEALSRKEILDKVERWMSACEE 388
>04_04_0703 +
27398358-27398466,27398549-27398859,27399044-27399109,
27399196-27399258,27399304-27399444,27399535-27399612,
27399688-27399738,27399829-27399863,27399982-27400090,
27400235-27400441
Length = 389
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +2
Query: 416 GEWAIPGGMVDPGEKVSETAIREFKEEALNSLSLADKIQWEKEIDEFFSEGEVIY 580
G W +P G + E++ A RE KEE D + + + F + ++ +
Sbjct: 245 GAWKLPTGFILASEEIFTGATREVKEETGVDTEFVDVVAFRHAHNVAFQKSDLFF 299
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 182 GNISRVSYNGPYQIVNGFPLNPL 250
G++S +SY GP ++N P NPL
Sbjct: 346 GSLSTLSYTGPPPLMNIMPRNPL 368
>04_01_0007 +
168423-168485,168590-168697,169662-169741,170497-170548,
171112-171200,171756-171875,172204-172248,172352-172436
Length = 213
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 125 YADPEIGDPNFEPL-WNSIDGNISRVSYNGPYQIVNGFPLNPLGRTGICGRGVLG 286
Y P++ D + PL WN +D V +G Q + +PL RT GV G
Sbjct: 40 YMSPQLFDAHLTPLGWNQVDCLREHVKKSGLAQKIELVITSPLLRTMQTAVGVFG 94
>03_01_0617 +
4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +2
Query: 167 WNSIDGNISRVSY-NGPY 217
WNS+DGN+ RVS+ PY
Sbjct: 751 WNSLDGNLGRVSHAEDPY 768
>01_03_0097 + 12534273-12534494,12535970-12536056
Length = 102
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 560 SEGEVIYQGYVDDCRNTDNSWIETIAYNFHDESGLTVGLLKLH 688
S G++ Y C N + + + F ++SG+ GL++LH
Sbjct: 25 SRGQLQVGFYNTSCPNAETLVRQAVTNAFANDSGIAAGLIRLH 67
>10_06_0164 + 11364436-11367280,11367357-11367715
Length = 1067
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 179 DGNISRVSYNGPYQIVNGFPLNPLGRTGICG 271
DG RVSY +Q NGF +N L TG G
Sbjct: 742 DGMYPRVSYYELFQSTNGFNVNNLVGTGRYG 772
>10_01_0055 -
785172-785997,786859-787394,787478-787695,787789-787891,
788723-788770
Length = 576
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 666 VKPLSSWKLYAMVSIQELSVFLQ 598
+KP+SSW L + ++EL + L+
Sbjct: 319 IKPMSSWSLCTVTQVEELKMLLR 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,486,535
Number of Sequences: 37544
Number of extensions: 452754
Number of successful extensions: 1201
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -