Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4g04
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    28   1.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.1  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.1  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   4.1  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   5.4  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   7.2  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.5  

>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 524 HSSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASYA 345
           H   A   G+ K+ G+     G P  +  VTS+   ++ R+G  PL  ++ L   +  Y 
Sbjct: 52  HIDTAHIYGNEKEIGEGIRESGVPRTDIWVTSKLWCNAHRAGLVPLALEKTLQDLNLEYI 111

Query: 344 PASVI 330
            A +I
Sbjct: 112 DAYLI 116


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
 Frame = -3

Query: 521 SSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASYAP 342
           SS    S  +  S   T     PS+    +S   SSS  S            S S+S + 
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 192

Query: 341 ASVITEGHPPT*A----FTSLFSRTKLSKRVSTDIHHSSARPFKANDTLSTFST 192
           +S  +     + +     TS  S +  S   S+    SS+RP  ++  ++T S+
Sbjct: 193 SSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSS 246


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 521 SSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGK 396
           SS      +AK+SG  T    +PS++ D+   +L   +R+G+
Sbjct: 59  SSDITRHSNAKNSGKDTQFYEEPSSKQDIELHKLHEKLRNGQ 100


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -3

Query: 365  SKSASYAPASVITEGHPPT*AFTSLFSRTKLSKRVSTDIHHSSARPFKANDTLSTFSTL 189
            + S  Y P++V+T  +  T  +TS  +   +S   + +    ++ P       ST+ST+
Sbjct: 1448 TSSTQYEPSTVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIYQGSGTSTWSTV 1506


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 281 TKLSKRVSTDIHHSSARPFKANDTLSTFSTLIHLLVLKL 165
           +KLSK+ +   HHSS   +  ++     S L HL  L+L
Sbjct: 138 SKLSKKETLVAHHSSVLWYLQSELSDVSSVLYHLQDLRL 176


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 426 FRSDIVFGTGFATGHGYVAGILGVARVWSPRAMEL 530
           F +DIV  TG      Y+A    V +++ PRA+++
Sbjct: 454 FEADIVEATGVVGSDPYLAPETLVRKLYDPRAVDI 488


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 241 EWCMSVETRLDSLVREKSEVKAYVGGCPSVITDAGAYDALFDMRRRWSN 387
           E C S+E     L  E +E+ AY+ GCP  I D  A +        +SN
Sbjct: 623 ELCPSIE----ELTLEGNEI-AYLTGCPVTIRDLNAVENRLSSLTSFSN 666


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 251 IHHSSARPFKANDTLSTFSTLIHLLVLKLD 162
           IHH+ AR  +AND L+     +  L+  LD
Sbjct: 206 IHHAEARAQEANDLLNEQRNALQSLLDSLD 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,556
Number of Sequences: 5004
Number of extensions: 45915
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)