Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4g04
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 31 0.80
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 31 1.1
01_06_1765 + 39735629-39736240 29 2.4
11_05_0037 - 18518414-18519078,18519203-18519254 29 3.2
08_02_0593 + 19078264-19078609,19078724-19082256 29 4.2
01_01_0889 + 7008077-7009261 29 4.2
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 28 5.6
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 28 7.4
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 27 9.8
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282... 27 9.8
05_05_0077 + 22226326-22226441,22226527-22226601,22227619-222277... 27 9.8
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12... 27 9.8
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 27 9.8
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612... 27 9.8
01_06_1420 + 37229111-37229601,37229682-37230084 27 9.8
01_06_0951 + 33301850-33302175,33302318-33303216,33303327-33303934 27 9.8
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -3
Query: 467 AGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASYAPASVITEGHP 315
AG +PS ED+ E + +++ +G P +++ + A PA T HP
Sbjct: 604 AGEQPSREDEAPEEVVEAAVANGAPTAVEKHNKLYSPAE-TPAGSGTRPHP 653
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = -3
Query: 542 IPSS*LHSSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMS 363
+PSS H+S SG AK S + A S + + E ++SS G R+ +
Sbjct: 427 VPSSSSHASEPSSSGQAKKSSESLPADSSLSRKVPSSGEYVNSSQGPGSSTSSTSERIAA 486
Query: 362 KSASYAP 342
S + AP
Sbjct: 487 SSVACAP 493
>01_06_1765 + 39735629-39736240
Length = 203
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 457 LPPAMVMSPESLASPEYGALELWSYDDG 540
+PP + PESL + L LWS+D G
Sbjct: 171 IPPPQSLLPESLPDDDGEPLRLWSFDAG 198
>11_05_0037 - 18518414-18519078,18519203-18519254
Length = 238
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 247 CMSVETRLDSLVREKSEVKAYVGGCPSVITDAGAYDALFDM 369
C +VE LDS+ R +G + GA+DAL DM
Sbjct: 138 CAAVEAGLDSVYRRCRSRDRSIGPLEIRVVAPGAFDALMDM 178
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = -3
Query: 527 LHSSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASY 348
L++ P+S ++ G + +P D+ + S+S +GK L+D++ L +
Sbjct: 686 LNTLHRPFSTNSASFGHKKLKVKRPDQSKDIPMKIASTSGLAGKDNLIDEKALSLEDDDI 745
Query: 347 APASVITEG 321
A V+ +G
Sbjct: 746 LKALVVHDG 754
>01_01_0889 + 7008077-7009261
Length = 394
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -3
Query: 506 YSGDAKDSGDITMAGGKPSAEDDVTSEELSS--SIRSGKPPLLDQRRLMSKSASYAPASV 333
+S DA D G +AGG A+ T SS S S +++ +K +P++
Sbjct: 213 FSSDADDRGGRVVAGGGGGAKKGETEAFFSSSRSFSSDSSEFYTKKKKRNKPKKKSPSTA 272
Query: 332 ITEGHPP 312
++ PP
Sbjct: 273 SSKAAPP 279
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 247 CMSVETRLDSLVREKSEVKAYVGGCPSVITDAGAYDALFDM 369
C +VE LD + R +G + +AGA+DAL D+
Sbjct: 549 CAAVEESLDYVYRRCRAHDRSIGPLEIRLVEAGAFDALMDL 589
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 554 QPSLCWVHAICNSNSYNLSNHIQHHRRSPR 643
QPS WV ++C + N + ++HHRRS R
Sbjct: 289 QPSE-WVCSLCQAKC-NTESQLEHHRRSTR 316
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 532 RSSIARGLHTRATPRIPAT*PWPVANPVPKTMSLLKSS 419
R A + A P P PWP + P P+T S +S
Sbjct: 48 RIEAASDTSSAAAPVAPTAAPWPPSPPPPRTPSAASTS 85
>06_02_0208 -
13026296-13026654,13027394-13027497,13028109-13028200,
13028418-13028774,13029932-13030109,13030454-13030507,
13030701-13030784,13031521-13031714
Length = 473
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 493 PRIPAT*PWPVANPVPKTMSLLKSS 419
P++P PWPVA PK ++ +KS+
Sbjct: 50 PQMPTPRPWPVAFIPPKPVAEIKST 74
>05_05_0077 +
22226326-22226441,22226527-22226601,22227619-22227781,
22227867-22228166
Length = 217
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 467 AGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSA 354
+GG+ ++ ELS+ + GKPP D+ ++S +A
Sbjct: 53 SGGQDNSASKKRFNELSAILEPGKPPRADKVSILSDAA 90
>05_01_0018 +
125697-126130,126231-126356,126726-126825,126950-126969,
127118-127220,127331-127469,127577-127791,127873-128523
Length = 595
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -3
Query: 515 RAPYSGDAKDSG---DITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASYA 345
R GDA ++ D ++GG P + S E+ + G P + RR+ + S A
Sbjct: 517 RMKTGGDAMETAAEEDAPLSGGTPVKRNSRKSSEVDAKGGGGSPVVSSPRRV---TRSNA 573
Query: 344 PASVITEGHPPT 309
AS +G P T
Sbjct: 574 KASGEADGSPAT 585
>03_02_0726 + 10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 80 HRRNS*NSRAFLTC*TSCVVTEKHHHKYQASKLIS 184
HR+ + R+ L C + V + HH YQA+ I+
Sbjct: 1148 HRQQRKDYRSILRCLKARVCRDSHHWSYQATHFIA 1182
>03_02_0171 +
6126685-6127107,6127237-6127581,6127701-6127997,
6129763-6129990,6130716-6131036
Length = 537
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 134 VVTEKHHHKYQASKLISE 187
V EKHHH +Q K++SE
Sbjct: 342 VAPEKHHHHHQQHKIMSE 359
>01_06_1420 + 37229111-37229601,37229682-37230084
Length = 297
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Frame = +1
Query: 355 ALFDMRRRWSNNGGFPLRMLXXXXXXXXXXXALGLPPAMVMSPESL----ASPEYGALEL 522
A D R+W + P L G PA ++ L SP+YG + L
Sbjct: 222 AFMDAWRKWES---VPAGRLFLGLPASKDAAGTGFVPAGELNSRVLPLIRGSPKYGGVML 278
Query: 523 WS--YDDGITYNTA 558
WS YDD Y++A
Sbjct: 279 WSKYYDDQTGYSSA 292
>01_06_0951 + 33301850-33302175,33302318-33303216,33303327-33303934
Length = 610
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 238 DEWCMSVETRLDSLVREKSEVKAYVGGCPSVITDAGAYDALFD 366
+E C+SVE L+S+ R+ +G + G +D L D
Sbjct: 506 EECCLSVEEALNSVYRQGRACDRSIGPLEIRVVAEGTFDKLMD 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,760,103
Number of Sequences: 37544
Number of extensions: 343743
Number of successful extensions: 1076
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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