Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4g04
(652 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M74078-1|AAA28498.1| 878|Drosophila melanogaster ecdysone recep... 41 0.001
BT015234-1|AAT94463.1| 878|Drosophila melanogaster RE06878p pro... 41 0.001
BT012469-1|AAS93740.1| 878|Drosophila melanogaster RE33854p pro... 41 0.001
AE013599-153|AAF57280.2| 878|Drosophila melanogaster CG1765-PB,... 41 0.001
AJ556818-1|CAD89223.1| 2162|Drosophila melanogaster SMG1 protein... 29 5.5
AE014298-963|AAF46207.2| 3218|Drosophila melanogaster CG32743-PA... 29 5.5
AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p pro... 28 9.6
AF145652-1|AAD38627.1| 499|Drosophila melanogaster BcDNA.GH0878... 28 9.6
AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,... 28 9.6
AE013599-801|AAF58981.2| 499|Drosophila melanogaster CG18659-PB... 28 9.6
AE013599-800|AAM68810.2| 908|Drosophila melanogaster CG18659-PA... 28 9.6
>M74078-1|AAA28498.1| 878|Drosophila melanogaster ecdysone receptor
protein.
Length = 878
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +1
Query: 367 MRRRWSNNGGFPLRMLXXXXXXXXXXXALGLPPAMVMSPESLASPEYGALELW 525
M+RRWSNNGGF L LP + MSP SL S +Y +LW
Sbjct: 1 MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQDLW 53
>BT015234-1|AAT94463.1| 878|Drosophila melanogaster RE06878p
protein.
Length = 878
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +1
Query: 367 MRRRWSNNGGFPLRMLXXXXXXXXXXXALGLPPAMVMSPESLASPEYGALELW 525
M+RRWSNNGGF L LP + MSP SL S +Y +LW
Sbjct: 1 MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQDLW 53
>BT012469-1|AAS93740.1| 878|Drosophila melanogaster RE33854p
protein.
Length = 878
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +1
Query: 367 MRRRWSNNGGFPLRMLXXXXXXXXXXXALGLPPAMVMSPESLASPEYGALELW 525
M+RRWSNNGGF L LP + MSP SL S +Y +LW
Sbjct: 1 MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQDLW 53
>AE013599-153|AAF57280.2| 878|Drosophila melanogaster CG1765-PB,
isoform B protein.
Length = 878
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +1
Query: 367 MRRRWSNNGGFPLRMLXXXXXXXXXXXALGLPPAMVMSPESLASPEYGALELW 525
M+RRWSNNGGF L LP + MSP SL S +Y +LW
Sbjct: 1 MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQDLW 53
>AJ556818-1|CAD89223.1| 2162|Drosophila melanogaster SMG1 protein
protein.
Length = 2162
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 447 GTGFATGHGYVAGILGVARVWSP 515
G G ATG G +AG+ G +WSP
Sbjct: 52 GRGGATGSGNIAGLGGSESMWSP 74
>AE014298-963|AAF46207.2| 3218|Drosophila melanogaster CG32743-PA
protein.
Length = 3218
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 447 GTGFATGHGYVAGILGVARVWSP 515
G G ATG G +AG+ G +WSP
Sbjct: 52 GRGGATGSGNIAGLGGSESMWSP 74
>AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p protein.
Length = 1062
Score = 28.3 bits (60), Expect = 9.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 524 HSSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSK 360
HSSR S ++ SG + G S++ S + R G P LD+RR+ S+
Sbjct: 1003 HSSRTSCSTNSS-SGSSSSGSGSGSSQSGSRSPSIPR--RRGSPSFLDRRRITSR 1054
>AF145652-1|AAD38627.1| 499|Drosophila melanogaster BcDNA.GH08789
protein.
Length = 499
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 515 SSYGATMTESLIIQPSLCWVHAICNSNSYNLSNHIQHH 628
+S GA L P++ ++C+S+ NLS +Q+H
Sbjct: 145 ASAGAHYGHHLAASPAVSSASSLCSSSEMNLSQELQNH 182
>AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,
isoform A protein.
Length = 1062
Score = 28.3 bits (60), Expect = 9.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 524 HSSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSK 360
HSSR S ++ SG + G S++ S + R G P LD+RR+ S+
Sbjct: 1003 HSSRTSCSTNSS-SGSSSSGSGSGSSQSGSRSPSIPR--RRGSPSFLDRRRITSR 1054
>AE013599-801|AAF58981.2| 499|Drosophila melanogaster CG18659-PB,
isoform B protein.
Length = 499
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 515 SSYGATMTESLIIQPSLCWVHAICNSNSYNLSNHIQHH 628
+S GA L P++ ++C+S+ NLS +Q+H
Sbjct: 145 ASAGAHYGHHLAASPAVSSASSLCSSSEMNLSQELQNH 182
>AE013599-800|AAM68810.2| 908|Drosophila melanogaster CG18659-PA,
isoform A protein.
Length = 908
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 515 SSYGATMTESLIIQPSLCWVHAICNSNSYNLSNHIQHH 628
+S GA L P++ ++C+S+ NLS +Q+H
Sbjct: 554 ASAGAHYGHHLAASPAVSSASSLCSSSEMNLSQELQNH 591
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,240,807
Number of Sequences: 53049
Number of extensions: 547385
Number of successful extensions: 1730
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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