Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4g04
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.27 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 261 LYRHTPLVSASVQSKRYVIHVLDSH 187
           LY H  L+S    SK Y++ ++ SH
Sbjct: 220 LYNHARLMSQDNHSKEYLVSIMFSH 244



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 305 AFTSLFSRTKLSKRVSTDIHHSSAR 231
           AF+ L+S + +S   S +++H SAR
Sbjct: 299 AFSKLYSVSVVSLDKSLEVNHISAR 323


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 284 RTKLSKRVSTDIHHSSARP 228
           R +L+ R S   HH +ARP
Sbjct: 109 RPELTNRKSVVFHHDNARP 127


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 472 VMSPESLASPEYGALELWSYDDGITYNTAQSLLG 573
           ++  + L   EY  +E W     I Y T+Q   G
Sbjct: 179 IILADELHLTEYKLVEKWVNSSEIFYTTSQQYYG 212


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 500 GDAKDSGDITMAGGKPS 450
           GD  D  D+  A GKP+
Sbjct: 397 GDDDDDDDVEAANGKPA 413


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 284 RTKLSKRVSTDIHHSSARP 228
           R +L+ R     HH +ARP
Sbjct: 231 RPELTNRKGVVFHHDNARP 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,352
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)