Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4g02
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    36   0.004
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    33   0.055
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    28   1.2  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    28   1.6  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   8.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.4  

>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 602 HVEILQKSMEESRLVKKEQEQNIESLKYIVKCLQEKQTTLE 724
           H+ +LQK ++E + + K   QN++S+  I+K L E  T+LE
Sbjct: 81  HLPVLQKGLQECQNLNKSVSQNLKSVMDILKSLAEDYTSLE 121


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 32.7 bits (71), Expect = 0.055
 Identities = 23/91 (25%), Positives = 39/91 (42%)
 Frame = -3

Query: 489 SVTKLSKCIGSFK*AKFSLISAVRSACVILFNIFSIFVFPLSDFPIDLSDSE*LAEENNV 310
           S++  S   G +  AKF ++  +   C+I F ++ IFV      P  L     +     +
Sbjct: 315 SISLASYDTGKWSDAKFIVMIIIGGLCLIAFVLYEIFVASFPALPFRLMREPTIGACCAM 374

Query: 309 GTAFSFSFFCASKYFNSKCFEQILLSTESNA 217
              F  +F+C   Y+ S  F Q++  T   A
Sbjct: 375 SFLFYITFYCWDNYYYS--FLQVVHYTSITA 403


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +2

Query: 491 DLKCKSDAPNAA------NLWLMIKKQEHLNTRLMDLVVQTKKHVEILQKSMEESRLVKK 652
           D+   SDAPN+       N  L  K   +L+T  + L+ + +   +     ++  + +KK
Sbjct: 194 DITQTSDAPNSNRNLLLNNSMLQEKISWYLDTVELHLLQEIENASDSFPMIIDNLKQLKK 253

Query: 653 EQEQNIESLKYIVKCLQE 706
           E   N+E  K++++ L E
Sbjct: 254 ETRDNVEETKHLLEKLTE 271


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +2

Query: 485 TDDLKCKSDAPNAANLWLMIKKQEHLNTRLMDLVVQTKKHVEILQKSMEESRLVKKEQEQ 664
           +DD     +  N+  +  M+  +   +   ++    +KKH + L+K  +E +   KE ++
Sbjct: 255 SDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQK 314

Query: 665 NIESLK 682
           N ES K
Sbjct: 315 NAESNK 320


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 306 TAFSFSFFCASKYFNSKCFEQIL 238
           T F   F CA++YFN +  E +L
Sbjct: 293 TRFRVQFSCANRYFNIQKAEDVL 315


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/86 (18%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +2

Query: 473  DSFVTDDLKCKSDAPNA-ANLWLMIKKQEHLNTRLMDLVVQTKKHVEILQKSMEESRLVK 649
            D   +  L+C++   ++   + L++++ +HLN  L       K+H+E      ++  LV 
Sbjct: 993  DEIASSSLRCENITKDSETRVALLLEENKHLNNELSSHRNAEKQHLEKENDYKQQLLLVT 1052

Query: 650  KEQEQNIESLKYIVKCLQEKQTTLEE 727
            ++  +  E  +  +    + ++TL++
Sbjct: 1053 EDLRKTREDYEKELLRHADARSTLQK 1078


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,911
Number of Sequences: 5004
Number of extensions: 53667
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)