Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4g02
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11...    30   2.2  
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771...    29   5.0  
04_04_1287 - 32390422-32391588,32392472-32392645                       28   6.6  
01_06_1015 + 33819203-33821827                                         28   6.6  
04_04_0063 - 22441549-22442961                                         28   8.7  

>08_01_0016 -
           109152-109214,109296-109385,109853-109954,110046-110213,
           110510-110530,110836-110896,110987-111099,112125-112202,
           112294-112434,112532-112696,112776-112868,113096-113162,
           113285-113388,113896-114041,114303-114579
          Length = 562

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 161 PYNSEMSNKWLRVLKQRCTAFDSVDSKIC 247
           PYN   +NKWLR   QR    +S+D  IC
Sbjct: 276 PYNYNGTNKWLRSFDQRVR--ESIDYAIC 302


>03_02_0348 +
           7709894-7709926,7710516-7710604,7711202-7711277,
           7712019-7712214,7712449-7712832,7712884-7714804,
           7714906-7714966,7715952-7716371
          Length = 1059

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +2

Query: 578 DLVVQTKKHVEILQKSMEE--SRLVKKEQEQNIESLKYIVKCLQEKQTTLE 724
           +++ +TK   + L+KS+EE  S+LV  E+  ++   +  +KC+ E   +LE
Sbjct: 805 EVIEETKFRFKELEKSLEELTSKLVASEKSNSLAETQ--LKCMAESYKSLE 853


>04_04_1287 - 32390422-32391588,32392472-32392645
          Length = 446

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
 Frame = +2

Query: 383 IEKILNRMTQADLTADIKLNLAHLKEPMHLDSFVTDDLKCKSDAPNAANLWLMIKKQEHL 562
           + K+  R   + L  +    L  L+  +  +  ++ +++ K D   A    L I++ E L
Sbjct: 30  LHKMRERRVFSILLQERDQQLISLQALLQKEQEISKEMRRKMDELEAKTSVLSIERTE-L 88

Query: 563 NTRLMD------LVVQTKKHVE--ILQKSMEESRLVKKEQEQNIESLKYIVKCLQEKQTT 718
             +LMD       +  T+K +E  +++K    +++ +       E +  I + LQ+K+  
Sbjct: 89  KNKLMDSETTTTYLTNTQKELEAALVEKEGHINQMKENAAASGPEQMAAIKELLQQKEAE 148

Query: 719 LEE 727
           LEE
Sbjct: 149 LEE 151


>01_06_1015 + 33819203-33821827
          Length = 874

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -3

Query: 699 RHLTMYFNDSIFCSCSFLTSLDSSMLFCSISTCFLVCTTR-SISLVLRCSCFLIISHKLA 523
           RH+  Y ++ +FC    L  LD S     I    + C TR  I L++ C     I H +A
Sbjct: 296 RHMK-YISEELFCHMEMLGILDLSFTGIKILPRSISCLTRLRILLLMGCDHLEEIQH-IA 353

Query: 522 ALGASDLHFKSSVTKLSKC-IGSF 454
           +L   ++   SS   L     GSF
Sbjct: 354 SLAQLEVLDASSCRSLRSIESGSF 377


>04_04_0063 - 22441549-22442961
          Length = 470

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/41 (34%), Positives = 28/41 (68%)
 Frame = +2

Query: 605 VEILQKSMEESRLVKKEQEQNIESLKYIVKCLQEKQTTLEE 727
           V++LQ+ +E++   K+ + + +ESL Y  K L++ + +LEE
Sbjct: 22  VQLLQREVEKA---KESERKMLESLIYQTKQLEQTKISLEE 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,404,111
Number of Sequences: 37544
Number of extensions: 291363
Number of successful extensions: 747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)