Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4g02
         (728 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   2.4  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   3.2  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    24   4.2  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   5.5  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    24   5.5  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   7.3  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 611 ILQKSMEESRLVKKEQEQNIESLKYIVKCLQEKQTTLEE 727
           +  +  EES  + +E E  +E +   ++ ++++  TLEE
Sbjct: 167 VYDERKEESMNLLRESEGKLEKISEYLRTIEDRLKTLEE 205


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +2

Query: 434 KLNLAHLKEPMHLDSF----VTDDLKCKSDAPNAANLWLMIKKQEHLNTRLMDLVVQTKK 601
           K +    K  +HLDS      +D  +  S+    A +    KK E      +    +   
Sbjct: 391 KADATSSKYLIHLDSVNREQKSDQDRLDSEINKKAQIEENYKKIESEKNEALKRQEKLID 450

Query: 602 HVEILQKSMEESRLVKKEQEQNIESLKYIVKCLQEKQTTLEE 727
           H++  +  +EE + +K E  Q++ + K  +  LQ +   + E
Sbjct: 451 HIKTSRLGLEEQKRIKAELSQDVGTSKERIHELQSELDNVRE 492


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 294 KKMQCQRYFLLLVTHCH*GQLESLTVEKRRLKK 392
           +KM   R  LLL+  C      SL++ KRR +K
Sbjct: 224 RKMLPSRPQLLLLELCKRSSFRSLSMHKRRTRK 256


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -3

Query: 531 KLAALGASD--LHFKSSVTKLSKC---IGSFK*AKFSLISAVRSACVILFNIFSIFV 376
           KL+ LG  D  + + SS      C    GS+   +F   S V   CV+   +FS+F+
Sbjct: 631 KLSKLGFGDGIISWLSSYLSNRSCRVKTGSYLSEEFFCTSGVPQGCVLSPLLFSLFI 687


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 626 MEESRLVKKEQEQNIESLKYIVKCL 700
           +EE+RLV +E E+  + L Y+ + L
Sbjct: 109 LEEARLVAEELEERQQELDYLKRYL 133


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 196 SEPFITHFRIVWASVESYIWSLVYRCSLQLSIAQRII 86
           SE  I +   +WA      W      S Q  +AQR++
Sbjct: 787 SEAIIRYGAPIWAEATDRQWCQRMLASFQRPLAQRVV 823


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,416
Number of Sequences: 2352
Number of extensions: 12831
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)