Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4g02
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-6|AAC46784.2|  236|Caenorhabditis elegans Hypothetical pr...    36   0.030
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    35   0.068
AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical ...    34   0.12 
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    33   0.16 
AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical...    30   1.5  
Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    29   3.4  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    29   3.4  
AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical...    28   5.9  

>U23510-6|AAC46784.2|  236|Caenorhabditis elegans Hypothetical
           protein R12C12.5 protein.
          Length = 236

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = +2

Query: 536 LMIKKQEHLNTRLMDLVVQTKKHVEILQKSMEESRLVKKEQEQNIESLKYIVKCLQEKQT 715
           L+IKKQE+   R+   V   KK+++  +K    +   KK  EQ +  +  ++  L+ ++T
Sbjct: 49  LLIKKQEYFELRIEQEVESAKKYMKTNKKMALAALRKKKHYEQELSRIDGVLTKLEAQRT 108

Query: 716 TLE 724
            LE
Sbjct: 109 ALE 111


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 113 QTTSVNKTPDVTFHRCPYNSEMSNKW----LRVLKQRCTAFDSVDSKICSKHFEL 265
           +TT+   T    F +C Y S MSN+W    L +L   C  F S+ + + +K+F L
Sbjct: 781 RTTTALSTNVDKFAQCRYLSHMSNRWLATRLELLGNTCVLFASLSATLSTKYFGL 835


>AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical
           protein T22B2.1 protein.
          Length = 955

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
 Frame = +2

Query: 452 LKEPMHLDSFVTDDLKCKSDAPNAANLWL------MIKKQEHLNTRLMDLVVQTKKHVEI 613
           LKE  H++S   + LK KSD  N  N  +      +++ Q+ L  + ++ V++ K  +  
Sbjct: 668 LKE--HVESIQREFLKYKSDMNNVNNETIRLQTTQLLEHQQALAQKSLE-VIEQKDEILH 724

Query: 614 LQKSMEESRLVKKEQEQNIESLKYIVKCLQEKQT 715
           L+   +  + V  +QE++I+SLK   + L+EK++
Sbjct: 725 LKAQNQSQQTVIAQQEKSIKSLKEKSQQLEEKRS 758


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/60 (35%), Positives = 35/60 (58%)
 Frame = +2

Query: 545  KKQEHLNTRLMDLVVQTKKHVEILQKSMEESRLVKKEQEQNIESLKYIVKCLQEKQTTLE 724
            K +E +N +L +L  +  + VE LQK +EES + K   E+ ++S K I + L++    LE
Sbjct: 1378 KAEESVNQQLEELRKKNLRDVEHLQKQLEESEVAK---ERILQSKKKIQQELEDSSMELE 1434


>AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical
           protein K12H6.7 protein.
          Length = 281

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +2

Query: 488 DDLKCKSDAPNAANLWLMIKKQEHLNTRLMDLVVQTKKHVEILQKSMEESRLVKKEQEQN 667
           DDL C  D  N    +L   K E LN   +D  +  K  +E L   M+   L   +++  
Sbjct: 86  DDLTCTPDIKNMKESYLATIKSESLNASTIDNFLSKKTSIEKLTLGMKV--LDNFQEDSA 143

Query: 668 IESLKY 685
           I  +KY
Sbjct: 144 IFRMKY 149


>Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical
           protein C55A1.12 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 684 YFNDSIFCSCSFLTSLDSSMLFCSISTCFLVCTTRSISLV 565
           YF+ S+F S   +T   ++ L   IS  +L CT R+I+L+
Sbjct: 253 YFSSSVFISMVLVTDFITTPLIIQIS--YLTCTKRNITLM 290


>Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical
           protein C07A4.3 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 98  CYRQLQTTSVNKTPDVTFHRC-PYNSEMSNKWLRVLKQRCTAFDSVDSKIC 247
           C+  L     NKTP  TF RC P  S++S   L ++      FD V   IC
Sbjct: 93  CFGSLWVDRSNKTPRQTFFRCSPTRSQVSRFLLNII------FDFVPFSIC 137


>U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical
           protein C28G1.3 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 155 RCPYNSEMSNKWLRVLKQRCTAFDSVDSKICSKHFELKYFDAQKKL 292
           R  Y++     + R L+QR + +D    K+CS H++  + DA ++L
Sbjct: 52  RAIYDTGDVQSFARALQQRISHYDKNIQKVCSFHYQ-SFVDAMQEL 96


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 593  TKKHVEILQKSMEESRLVKKEQEQNIESLK 682
            TKKHV+ L+ S+ ++   K+ ++ NI SL+
Sbjct: 963  TKKHVQDLELSLRKAEQEKQSRDHNIRSLQ 992


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 158 CPYNSEMSNKWLRV-LKQRCTAFDSVDSKICSKHFELKYFDAQKKLKEN 301
           CP N ++  KW+ + +  R  A D++  ++    FE K F  Q ++K N
Sbjct: 41  CPSNEDLLGKWIHLAIDDRSYACDTI--QVIDDVFETKVFRGQVEVKIN 87


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 593  TKKHVEILQKSMEESRLVKKEQEQNIESLK 682
            TKKHV+ L+ S+ ++   K+ ++ NI SL+
Sbjct: 963  TKKHVQDLELSLRKAEQEKQSRDHNIRSLQ 992


>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 68  LTDDGSDNTLCYRQLQTTSVNKTPDVTFHRCPYNSEMSNKWLRVLKQRCTAFDSVDSKIC 247
           L D  +D ++C        VN     T  RCP ++  S+         CT++++  S +C
Sbjct: 67  LVDCATDISICTTVGMQDFVNTYCQRTCGRCPSSTTASSSSTASSSSTCTSYNADSSSLC 126

Query: 248 S 250
           S
Sbjct: 127 S 127


>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 657 CSFLTSLDSSMLFCSISTCFLVCTTRSISLVL 562
           C     L+   LF SIST  +VC  R I++VL
Sbjct: 93  CPVCRYLECVFLFASISTQMIVCIERYIAIVL 124


>AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical
           protein W08E12.1 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
 Frame = +2

Query: 455 KEPMHLDSFVTDDLKCKSDAPNAANLWLMIKKQEHLNTRLMDLVVQTKKHVEILQKSMEE 634
           KE  H+ +   D  KC+ +  N A   + I         L+D+V+QT  +++    S +E
Sbjct: 108 KECDHIMNSAGDCEKCQVEHENGAQEAIPIND-------LVDIVMQTVDNLKKEGSSNDE 160

Query: 635 SRLVKKEQEQN-IESLKYIVKCLQEKQTTLEE 727
           ++L+ ++++QN + + +Y  K   + Q  L++
Sbjct: 161 TKLLSRKRQQNKVAAARYRDKQKAKWQDLLDQ 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,473,323
Number of Sequences: 27780
Number of extensions: 307738
Number of successful extensions: 994
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)