Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4f21
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955     31   1.1  
08_02_0402 - 16769239-16769504,16769842-16770016,16772762-167730...    28   5.6  
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799...    28   5.6  
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    28   5.6  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    28   5.6  
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029...    28   7.5  
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888...    27   9.9  

>08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955
          Length = 212

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -1

Query: 443 RPPKSRNTDPMRTDTSSFVT*SKHCAAVSTHCLLTMAPPHQCLPCNLTET 294
           RPPKSR   P        +  SKH   V  HC     P H    C L +T
Sbjct: 51  RPPKSRRKAPHEVQGKHGLKMSKH--GVEMHCKYCNEPGHNQRGCKLKKT 98


>08_02_0402 -
           16769239-16769504,16769842-16770016,16772762-16773028,
           16773156-16773368
          Length = 306

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 360 QHPLLADDGTPAPML-AVQPNRNSVRIILQAHKARLGGEP 244
           Q P + D G    +L AV P RN  R  +  H +R GG P
Sbjct: 120 QAPHINDHGKVHDVLQAVIPRRNQTRQRIHIHTSRAGGSP 159


>06_02_0364 +
           15178583-15178881,15179652-15179723,15179853-15179917,
           15180890-15180934,15182493-15183170,15183376-15183410,
           15183647-15183736,15183896-15183985,15184164-15184262,
           15184938-15185013,15185473-15185588
          Length = 554

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 454 VLDVRRHPDYRVD--QYYPEHNLAMVKVNLPIAANSRMQAV 570
           ++ + RH  +RVD  ++ P H++ +  + +PI A +R  +V
Sbjct: 127 LMGMHRHRQHRVDFMEWAPGHHVGVALITMPIRAGARYCSV 167


>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
            693391-693518,693951-694010,694113-694163,694704-694821,
            694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 124  IHVSNHSRCINNISASTSKTELECEFPPKMEEDLSHVRRKRLTTET 261
            I +S HS+ +   S      E EC  PP++ E     R+ ++  E+
Sbjct: 1212 IELSPHSKALPESSPDNQDIEPECPSPPQIPESKELSRQSKILPES 1257


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +3

Query: 24  PGHAGPCSSKSIVTSCMQQVMGKLTNILKLNNFYP 128
           PGH    S   I TSC       LTN L   N  P
Sbjct: 97  PGHRRTGSGPLIFTSCSSSATSPLTNALPAGNICP 131


>04_03_0389 -
           15302079-15302120,15302545-15302634,15302718-15302983,
           15303196-15303883
          Length = 361

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = -1

Query: 443 RPPKSRNTDPMRTDTSSFVT*SKHCAAVSTHCLLTMAPPHQCLPCNL 303
           RPPKSR   P      +    SKH   V  HC     P H    C L
Sbjct: 242 RPPKSRRKAPHEVQGKNGSKMSKH--GVEMHCSYCKEPGHNKKGCPL 286


>06_01_1084 +
           8883301-8883515,8883736-8884063,8884764-8885022,
           8885581-8885681
          Length = 300

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 376 SIARRSAPIAC*RWHPRTNACRAT*QKQCTDNP 278
           S  R S   +C RW  R++ C A   K  TD P
Sbjct: 126 SSTRPSGTSSCSRWRSRSSVCVAQAAKCATDRP 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,386,896
Number of Sequences: 37544
Number of extensions: 473812
Number of successful extensions: 1507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)