Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4f18
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce... 43 3e-05
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.0
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 27 1.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 3.1
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 5.4
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 7.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.5
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 25 9.5
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 25 9.5
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 9.5
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 25 9.5
>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 139
Score = 42.7 bits (96), Expect = 3e-05
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Frame = +2
Query: 59 MVRFKNRYITVEIVCPTVSE-------KTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKS 217
MVRFK+RY+ E++ P E + + + V + GD G+ + S
Sbjct: 1 MVRFKSRYLLFEVLYPEAKEFFDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVAS 60
Query: 218 GFLTKYCNESTRIAIIRVRHGPHRFVTSSLPFVKTIGKLNVRLNTLHVGATLK 376
KY + +T I+RV R ++L ++ + V + + V T+K
Sbjct: 61 SLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIK 113
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 321 VLTKGKELVTNLCGPC-LTRIIAILVLSLQYLVKNPDLIAATPKSPWICCTLCNTVL 154
+L G V N C C L R+ I + S+ L+K D + TP+ C+ VL
Sbjct: 107 LLEIGSVSVDNKCSTCGLFRVSRIDLHSVHPLIKQQDFLERTPEEGLFTGISCSLVL 163
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 118 F*NCWTY-NFYSYISIFKTNHYLNLKQVKQKDS 23
F N W Y N Y+Y + N L+LKQ++ +
Sbjct: 200 FSNIWVYSNNYTYCKYWPFNEILSLKQIRHNQT 232
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 103 TYNFYSYISIFKTNHYLNLKQVKQKDSDKLGL 8
T+ +Y + H LNL K + DKLGL
Sbjct: 1302 TFVYYYIVEDTVEGHILNLSLTKHEQLDKLGL 1333
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 249 VLSLQYLVKNPDLIAATPKSPWIC 178
++S + L++NP L A ++PW C
Sbjct: 229 IMSARGLLENPALFAGYEETPWGC 252
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 300 LVTNLCGPCLTRIIAILVLSLQYLVKN 220
L++N+ P +RI +LSLQ+ +KN
Sbjct: 385 LISNINQPSTSRIDTSFMLSLQHEIKN 411
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 498 SVFVKSKTACSNCCLSSGVFNLTH 427
SVF SK+ CS VFNL H
Sbjct: 1325 SVFNISKSVCSKYVQFGNVFNLLH 1348
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 99 YVQQFQKKRHYS*NRVSFIAQYCIKCSKS--MVILGSLLLSR 218
+V Q ++ S +R+SF+ + CIK +K +VI +LLL +
Sbjct: 210 HVTQVWERGTCSPSRLSFLTEKCIKNAKDTRLVINHALLLEK 251
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 56 IMVRFKNRYITVEIVCPTVS 115
++VRF NR++T +IV V+
Sbjct: 51 LVVRFSNRFVTCQIVSSRVN 70
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 386 KFIQKFQRAYLDARWVKLKTPEERQQLEQ 472
+F F+ LD WV+ T +Q LEQ
Sbjct: 66 EFQDCFENEQLDVEWVESVTFHRKQNLEQ 94
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 56 IMVRFKNRYITVEIVCPTVS 115
++VRF NR++T +IV V+
Sbjct: 51 LVVRFSNRFVTCQIVSSRVN 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,838
Number of Sequences: 5004
Number of extensions: 42104
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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