Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4f18
(538 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012505-1|AAH12505.1| 163|Homo sapiens processing of precursor... 78 2e-14
AJ306296-1|CAC59822.1| 163|Homo sapiens Pop5 protein protein. 78 2e-14
AK223206-1|BAD96926.1| 163|Homo sapiens processing of precursor... 73 9e-13
AF117232-1|AAF17213.1| 162|Homo sapiens protein x 0003 protein. 71 2e-12
U96629-1|AAB67601.1| 409|Homo sapiens unknown protein CIT987SK_... 30 4.5
BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subu... 30 4.5
AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens ... 30 4.5
>BC012505-1|AAH12505.1| 163|Homo sapiens processing of precursor 5,
ribonuclease P/MRP subunit (S. cerevisiae) protein.
Length = 163
Score = 77.8 bits (183), Expect = 2e-14
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Frame = +2
Query: 59 MVRFKNRYITVEIVCPTVSEKTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYC 238
MVRFK+RY+ E+V + L L + S V + ++HG FG AA GF +Y
Sbjct: 1 MVRFKHRYLLCELVSD--DPRCRLSLDDRVLSSLVRDTIARVHGTFGAAACSIGFAVRYL 58
Query: 239 NESTRIAIIRVRHGPHRFVTSSLPFVKTIGKLNVR----LNTLHVGATLKHTFKFIQKFQ 406
N T I ++R R ++ V S+LPF+ + R NTLHVG T++ KF+ ++
Sbjct: 59 NAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFLIQYN 118
Query: 407 RAYLDARWVKLKTPEERQQLEQAV 478
R L ER+ ++++V
Sbjct: 119 RRQLLILLQNCTDEGEREAIQKSV 142
>AJ306296-1|CAC59822.1| 163|Homo sapiens Pop5 protein protein.
Length = 163
Score = 77.8 bits (183), Expect = 2e-14
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Frame = +2
Query: 59 MVRFKNRYITVEIVCPTVSEKTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYC 238
MVRFK+RY+ E+V + L L + S V + ++HG FG AA GF +Y
Sbjct: 1 MVRFKHRYLLCELVSD--DPRCRLSLDDRVLSSLVRDTIARVHGTFGAAACSIGFAVRYL 58
Query: 239 NESTRIAIIRVRHGPHRFVTSSLPFVKTIGKLNVR----LNTLHVGATLKHTFKFIQKFQ 406
N T I ++R R ++ V S+LPF+ + R NTLHVG T++ KF+ ++
Sbjct: 59 NAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFLIQYN 118
Query: 407 RAYLDARWVKLKTPEERQQLEQAV 478
R L ER+ ++++V
Sbjct: 119 RRQLLILLQNCTDEGEREAIQKSV 142
>AK223206-1|BAD96926.1| 163|Homo sapiens processing of precursor 5,
ribonuclease P/MRP subunit isoform a variant protein.
Length = 163
Score = 72.5 bits (170), Expect = 9e-13
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Frame = +2
Query: 59 MVRFKNRYITVEIVCPTVSEKTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYC 238
MVRFK+RY+ E+V + L L + S V + ++HG FG AA GF +Y
Sbjct: 1 MVRFKHRYLLCELVSD--DPRCRLSLDDRVLSSLVRDTIARVHGTFGAAACSIGFAVRYL 58
Query: 239 NESTRIAIIRVRHGPHRFVTSSLPFVKTIGKLNVR----LNTLHVGATLKHTFKFIQKFQ 406
N T I ++R R ++ V S+LPF+ + R +TL VG T++ KF+ ++
Sbjct: 59 NAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFDTLRVGGTIRTCQKFLIQYN 118
Query: 407 RAYLDARWVKLKTPEERQQLEQAV 478
R L ER+ ++++V
Sbjct: 119 RRQLLILLQNCTDEGEREAIQKSV 142
>AF117232-1|AAF17213.1| 162|Homo sapiens protein x 0003 protein.
Length = 162
Score = 71.3 bits (167), Expect = 2e-12
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Frame = +2
Query: 59 MVRFKNRYITVEIVCPTVSEKTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYC 238
MVRFK+RY+ E+V + L L + S V + ++HG FG A GF +Y
Sbjct: 1 MVRFKHRYLLCELVSD--DPRCRLSLDDRVLSSLVRDTIARVHGTFG-APCSIGFAVRYL 57
Query: 239 NESTRIAIIRVRHGPHRFVTSSLPFVKTIGKLNVR----LNTLHVGATLKHTFKFIQKFQ 406
N T I ++R R ++ V S+LPF+ + R NTLHVG T++ KF+ ++
Sbjct: 58 NAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFLIQYN 117
Query: 407 RAYLDARWVKLKTPEERQQLEQAV 478
R L ER+ ++++V
Sbjct: 118 RRQLLILLQNCTDEGEREAIQKSV 141
>U96629-1|AAB67601.1| 409|Homo sapiens unknown protein
CIT987SK_2A8_1 protein.
Length = 409
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 68 FKNRYITVEIVCPTVSEKTPLQLKPGIFHSTV 163
FK RY +EI+ P+++KPGI +TV
Sbjct: 260 FKRRYEKIEIMPELADSLVPMEIKPGISLATV 291
>BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subunit
9 protein.
Length = 658
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 68 FKNRYITVEIVCPTVSEKTPLQLKPGIFHSTV 163
FK RY +EI+ P+++KPGI +TV
Sbjct: 509 FKRRYEKIEIMPELADSLVPMEIKPGISLATV 540
>AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens
cDNA FLJ10871 fis, clone NT2RP4001696, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 658
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 68 FKNRYITVEIVCPTVSEKTPLQLKPGIFHSTV 163
FK RY +EI+ P+++KPGI +TV
Sbjct: 509 FKRRYEKIEIMPELADSLVPMEIKPGISLATV 540
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,544,593
Number of Sequences: 237096
Number of extensions: 1321530
Number of successful extensions: 2501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2494
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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