Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4f18
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   3.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 255 ILVLSLQYLVKNPDLIAATPKSPWICCTLCNTVL 154
           +L L   +L KNPD I A   S ++    CN++L
Sbjct: 390 VLALVRPFL-KNPDAIPAFLSSLFLWLGYCNSLL 422


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 259 YNTSKTWTTQICYKFFAFC*NYW 327
           +N   T+T +I Y  F     YW
Sbjct: 192 FNAFPTYTHEITYSLFGMIMMYW 214


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 366 QH*NILSNLYKSFKELIWMQGGLS 437
           Q  N+L  L++  ++ +++Q G+S
Sbjct: 448 QRKNVLDRLFRMDRDAVYLQPGMS 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,753
Number of Sequences: 438
Number of extensions: 2850
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)