Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4f08
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1032 + 10447474-10448030,10448784-10449813                       34   0.097
07_03_0093 + 13330867-13332312                                         30   1.6  
03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350     29   4.8  
05_07_0234 - 28566846-28567766                                         28   6.4  
01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724     28   6.4  
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004     28   8.5  
05_06_0163 - 26082276-26082369,26082751-26082814,26082899-260829...    28   8.5  
05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705     28   8.5  

>08_01_1032 + 10447474-10448030,10448784-10449813
          Length = 528

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
 Frame = -1

Query: 301 DPCSKLHTSRKCLSLSIHSAPSRVLWLVSRAE----CIWCLRRKRTAPAWSLRGGSQSCA 134
           D  +   + +  LSL + S PS  L   SR +     +W LRR   A A +LR G + CA
Sbjct: 68  DASTAASSPKHALSLLLSSPPSPGLPPASRRDLLVRALWELRRDPDAAALALRWGEEGCA 127

Query: 133 EACAR----PASAPSTQIW 89
            A  R    P   P  + W
Sbjct: 128 AAGERAGPPPPPPPPAEAW 146


>07_03_0093 + 13330867-13332312
          Length = 481

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -1

Query: 307 PLDPCSKLHTSRKCLSLSIHSAPSRVLWLVSRAECIWCLRRKRTAPAWSLRGGSQSCAEA 128
           P    S L      L+   HS P+ V+  +    C+W +R   T P W LR      A+ 
Sbjct: 269 PASRLSWLGRHNLLLAAGSHSGPAGVVGDI----CLWDVRASATVPVWELREKEDCFADI 324

Query: 127 CARPA 113
            A  A
Sbjct: 325 AASEA 329


>03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350
          Length = 358

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 313 SFIDNARRSAEIYGLEIEN-MTAEDIKKRWNGIQ 411
           +F+D AR    ++G   E+   A+D++K W G+Q
Sbjct: 83  TFLDTARHRRVLWGWANESDSAADDVRKGWAGVQ 116


>05_07_0234 - 28566846-28567766
          Length = 306

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 93  IWVEGADAGRAHASAQLWEPPRSDQAGAVRLRRR 194
           +W  GA AG A ASA    P +S   G++   RR
Sbjct: 156 LWTPGAGAGSASASASPRPPRKSGSTGSMARWRR 189


>01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724
          Length = 271

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 39  DHCGQRIRWFVCRLLRLQIWVEGADAGRAHASAQL 143
           DH G+   +F+ RL RLQ+W E A  G    S ++
Sbjct: 119 DHLGRS--FFLSRLFRLQVWSEHAGQGELIESVRV 151


>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
          Length = 258

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +3

Query: 105 GADAGRAHASAQLWEPPRSDQAGAVRLRRRHQ 200
           GA  G  HA A      R  + GAVRLRRR Q
Sbjct: 125 GAGGGWRHAGAGGRRRHRRARRGAVRLRRRRQ 156


>05_06_0163 -
           26082276-26082369,26082751-26082814,26082899-26082972,
           26083644-26083759,26084644-26084909,26085002-26085092
          Length = 234

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = -1

Query: 259 LSIHSAPSRVLWLVSRAECIWCLRR 185
           +S++++  +V+++ S A  +WC+RR
Sbjct: 56  ISLYNSVMKVVFITSSAAIVWCMRR 80


>05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705
          Length = 265

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 39  DHCGQRIRWFVCRLLRLQIWVEGADAG 119
           DH G+   +F+ RL RLQ+W E A  G
Sbjct: 113 DHLGRS--FFLSRLFRLQVWSEHAGQG 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,389,222
Number of Sequences: 37544
Number of extensions: 369721
Number of successful extensions: 1140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)