Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4f08
         (715 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   1.8  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    24   4.1  
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    23   9.5  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 163  SLRGGSQSCAEACARPASAPSTQIWRRNSRQTNQRIR 53
            ++R   + C E  + P+S+P T   R N R    R+R
Sbjct: 1062 TVRQREEQCGERPSMPSSSPRTSERRANIRARMARLR 1098


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 130 ACARPASAPSTQIWRRNSRQTNQRIRCPQ 44
           A  R A A +T +W R       R+R P+
Sbjct: 230 ALERTAVAATTSLWERRDGTQRARVRLPR 258


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 627 RSCRDKCLTTLENAFFSFDNNFIFSRCHGRD 535
           + CR + L      +  ++     +RCHG+D
Sbjct: 201 KCCRLRLLERRRQCYRCYEYGHTAARCHGKD 231


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,883
Number of Sequences: 2352
Number of extensions: 14162
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)