Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4f05
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 53 3e-08
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 48 2e-06
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 48 2e-06
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 47 3e-06
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 45 9e-06
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 44 2e-05
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 43 5e-05
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 42 8e-05
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 40 2e-04
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 40 4e-04
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 40 4e-04
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 40 4e-04
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 38 0.001
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 31 0.11
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 29 0.46
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 29 0.60
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 28 1.4
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 26 5.6
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 26 5.6
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 7.4
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 25 7.4
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 7.4
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 9.8
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 53.2 bits (122), Expect = 3e-08
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 5/148 (3%)
Frame = +2
Query: 83 KMSTKVAVVIGANKGIGFAIVR-GLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPSYH 259
K + ++ G++KG+G+A+V+ GL + +N V SR + I +E K L
Sbjct: 2 KSTFSTVLITGSSKGLGYALVKVGLAQGYN--VIACSRAPDT--ITIEHSKLLKL----- 52
Query: 260 QLDITNKKSVE-SFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLT 436
+LD+T+ KSVE +F+D K ++ +DI+INNA + + + VNF+ +
Sbjct: 53 KLDVTDVKSVETAFKD-AKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVA 111
Query: 437 STCEILFPIVK---NGGRVINVSSSAGH 511
+ +++ GGR++ +SS AG+
Sbjct: 112 YITKEALNLMRESGKGGRILQISSVAGY 139
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 47.6 bits (108), Expect = 2e-06
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Frame = +2
Query: 83 KMSTKVAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEER-GKIAVETLKNEGLNPSYH 259
++ K ++ GA+ GIG + + K + L +R +IA E ++
Sbjct: 3 RLDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFSTVEEIAKELESKYEVSVLPL 62
Query: 260 QLDITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLY-VNFFSLT 436
+LD+++ KS+ + + ++ ID+LINNA +A + + + T+ N +
Sbjct: 63 KLDVSDLKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAVTMITTNVLGMM 122
Query: 437 STCEILFPIV--KNGGRVINVSSSAGHLSRI 523
+ + PI KN G ++NV S AG S +
Sbjct: 123 AMTRAVLPIFYSKNKGDILNVGSIAGRESYV 153
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 47.6 bits (108), Expect = 2e-06
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Frame = +2
Query: 95 KVAVVIGANKGIGFAIVRGLCKRFNGTV--YLTSRDEERG-KIAVETLKNEGLNPSYHQL 265
K VV GA KGIGF+I + + YLT+ E+ K+A ET G+ ++
Sbjct: 22 KNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEET----GVQVHTLKI 77
Query: 266 DITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTSTC 445
DI+ +VE+ + I+ ++ I +++ NA + F+++ + + E+ + +N S+
Sbjct: 78 DISRSDTVEAGVEEIQKIFKEIHVVVANAGMPFRRSVLDSPPHEFEKVMNINTNSVYRVA 137
Query: 446 EILFPIVKNGG 478
+ I K G
Sbjct: 138 YYMGKIFKKQG 148
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/90 (30%), Positives = 46/90 (51%)
Frame = +2
Query: 89 STKVAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPSYHQLD 268
+ KV + G N+GIG ++V+ L R TV+ ++R E E K+ N +LD
Sbjct: 4 TNKVYFIAGGNRGIGLSLVKELSSREGTTVFASARKPEAATELQEWSKSHP-NVKTVELD 62
Query: 269 ITNKKSVESFRDYIKTKYEGIDILINNAAI 358
+T+++S + +GID+L N+ I
Sbjct: 63 VTSQQSANEAAQSVAKAVDGIDVLWLNSGI 92
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 45.2 bits (102), Expect = 9e-06
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = +2
Query: 86 MSTKVAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPS--YH 259
++ KVA+V G++ GIG+ L ++ VYL R+EE+ + ++ + +E + +
Sbjct: 40 LTGKVALVTGSSGGIGYVTALELARK-GAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFL 98
Query: 260 QLDITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTS 439
+LD+ + +SV + K E + IL+NNA I E E + N+ S
Sbjct: 99 RLDLLDFESVYQAAESFIAKEEKLHILVNNAGI--MNPPFELTKDGYELQIQTNYLSHYL 156
Query: 440 TCEILFPIVK 469
E+L P ++
Sbjct: 157 FTELLLPTLR 166
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 44.0 bits (99), Expect = 2e-05
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 5/151 (3%)
Frame = +2
Query: 83 KMSTKVAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEER--GKIAVETLKNEGLNPSY 256
K++ K ++ G + GIG A + R + ++ EER ++ + ++ EG N
Sbjct: 39 KLAEKKTLLTGGDSGIGKAAAV-MFAREGSDLVISCLPEERDDAEVTRDLIEREGRNCWI 97
Query: 257 HQLDITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQ---TLYVNFF 427
+ + + D+ K ID+L+NN IA++Q A + EQ T N F
Sbjct: 98 WEGKLDKSDNCRDLVDFALKKLGWIDVLVNN--IAYQQVAQSIEDIDDEQWDLTFKTNIF 155
Query: 428 SLTSTCEILFPIVKNGGRVINVSSSAGHLSR 520
S + +K+G ++N SS ++ R
Sbjct: 156 SFFWVTKAAISHMKSGSSIVNCSSINAYVGR 186
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 42.7 bits (96), Expect = 5e-05
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 2/148 (1%)
Frame = +2
Query: 95 KVAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPSYHQLDIT 274
K AVV G +GIG AI + ++ K A E + G+ + D+T
Sbjct: 22 KNAVVFGGARGIGHAICSVFAEA-GANAFIVYNTTPGEKAAKEIAQANGVKTYTCKCDVT 80
Query: 275 NKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTSTCEIL 454
K VE I+ ++ IDI++ N I ++A + + + VN + +
Sbjct: 81 IPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAIDMTYEEFANEINVNLLGVFNVAHNA 140
Query: 455 FPIV-KNG-GRVINVSSSAGHLSRIPSE 532
PI K G G ++ +S +G + +P +
Sbjct: 141 GPIFQKQGHGSLVATASMSGVVVNVPQQ 168
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 41.9 bits (94), Expect = 8e-05
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 1/140 (0%)
Frame = +2
Query: 89 STKVAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPSYHQLD 268
+ K+ + G N+GIG ++V+ L R V+ ++R E E K+ N +LD
Sbjct: 4 TNKIYFIAGGNRGIGLSLVKELSNREGTVVFASARKPEAATELQEWSKSHS-NVHIIKLD 62
Query: 269 ITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLY-VNFFSLTSTC 445
I++ +S + +D+L N+ I N + Y N
Sbjct: 63 ISSLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTNVLGPIHVY 122
Query: 446 EILFPIVKNGGRVINVSSSA 505
+ +P+VK G I V +S+
Sbjct: 123 QAFYPLVKKGESKIIVFTSS 142
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 40.3 bits (90), Expect = 2e-04
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Frame = +2
Query: 89 STKVAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPSYHQLD 268
+ K+ + G N+GIG ++V+ L R GTV S + ++ N +LD
Sbjct: 4 TNKIYFIAGGNRGIGLSLVKELSNR-KGTVVFASARKPGAATKLQEWSKSHSNVHIIKLD 62
Query: 269 ITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLY-VNFFSLTSTC 445
+++ +S + + +D+L N+A+ + Y N
Sbjct: 63 VSSLESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNSHYKTNVLGPIHVY 122
Query: 446 EILFPIVKNGGRVINVSSSA 505
+ +P++K G I V +S+
Sbjct: 123 QAFYPLIKKGRSKIIVFTSS 142
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 39.5 bits (88), Expect = 4e-04
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Frame = +2
Query: 95 KVAVVIGANKGIGFAIVRGLCKRFNG---------TVYLTSRDEERGKIAVETLK----N 235
K A++ G+N G+GF I L + + TV LT R E+ + A LK +
Sbjct: 5 KYALITGSNSGLGFGIATRLLQFYQPRLQDEPEVFTVILTCRSREKAEDACRRLKEFFPD 64
Query: 236 EGLNPSYHQLDITNKKSVESFRDYIKTKYEGIDILINNA 352
+ Y LD++N SVE+ I T++ +D + NA
Sbjct: 65 RKIRLEYVLLDLSNMASVEAAVQDIATRFPKLDFVYLNA 103
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 39.5 bits (88), Expect = 4e-04
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +2
Query: 260 QLDITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTS 439
QLD+ N S++ + + + ID+L+NNA + Q N F
Sbjct: 20 QLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALE 79
Query: 440 TCEILFPIVK--NGGRVINVSSSAGHLS 517
+ + PI + + G +INVSS G ++
Sbjct: 80 VIKAITPIFRSQHNGMIINVSSIGGKMT 107
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 39.5 bits (88), Expect = 4e-04
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +2
Query: 260 QLDITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTS 439
QLD+ N S++ + + + ID+L+NNA + Q N F
Sbjct: 20 QLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALE 79
Query: 440 TCEILFPIVK--NGGRVINVSSSAGHLS 517
+ + PI + + G +INVSS G ++
Sbjct: 80 VIKAITPIFRSQHNGMIINVSSIGGKMT 107
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/88 (26%), Positives = 45/88 (51%)
Frame = +2
Query: 98 VAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPSYHQLDITN 277
V V++G N+GIG ++V+ L + TV+ ++R + K N +LD+T+
Sbjct: 8 VYVIVGGNRGIGLSLVKELSNKEGVTVFASARGPGSASELKDWSKTHS-NVHIIKLDVTS 66
Query: 278 KKSVESFRDYIKTKYEGIDILINNAAIA 361
+S + ++ + ID+L N+ I+
Sbjct: 67 LRSAKDAAMQVEKVVKCIDVLWVNSGIS 94
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 31.5 bits (68), Expect = 0.11
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Frame = +2
Query: 95 KVAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPSYHQLDIT 274
+V ++ GA GIG + LCK F D G V+ K + + Q D++
Sbjct: 6 RVVLITGAAGGIG----KVLCKMFTEL-----GDRVAGIDIVDPSKVQDAALAL-QADVS 55
Query: 275 NKKSVESFRDYIKTKYEGIDILINNAAIA----FKQNATEPVAVQAEQTLYVNFFSLTST 442
+E+ + + ID+LINNA +A F+Q + E L N+ +
Sbjct: 56 KADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYLTQRYV 115
Query: 443 CEILFPIVKNGGRVINVSSSAGHL 514
+ K GG ++N+ S GH+
Sbjct: 116 IPHMAKQGK-GGSIVNIGSVNGHI 138
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 29.5 bits (63), Expect = 0.46
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +2
Query: 266 DITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTSTC 445
+IT K VE +K LIN AAIA K + + ++ N +
Sbjct: 86 NITKDKDVEGCVHSLKKMNRTPFALINAAAIAPKNHLLSISRQELQKCFETNVIGQLAIT 145
Query: 446 EILFPIVKN--GGRVINVSSSAGHLS 517
LFP++ V+N++SS + S
Sbjct: 146 SALFPLLLQDPNPHVVNIASSLAYFS 171
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 29.1 bits (62), Expect = 0.60
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 200 ERGKIAVETLKNEGLNP-SYHQLDITNKKSVESFRDYIKTKYE 325
E KIA+ T E P + H+LDIT+ E+ + Y K K++
Sbjct: 246 ENAKIAILTCPFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQ 288
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 188 SRDEERGKIAVETLKNEGLNPSYHQLDITNKKSVESFRDY-IKTKYEGI 331
+R E++ + A+ + E L+ YH D+T +KS++ + Y + +K++GI
Sbjct: 93 ARQEDKPRSAIIS---ELLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGI 138
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 5.6
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Frame = +2
Query: 194 DEERGKIAVETLKNEGLNPSYHQLDITNKKSVESFRDYIKTKY---EGIDILINNAAIAF 364
D E G A N +PS L I NK+ V S + GI+ L+ ++ I
Sbjct: 83 DSESGLTASVACCNCCRHPSEACLYILNKRKVMSQHGLVPPAMLVGNGIEKLLLHSNIKL 142
Query: 365 KQNA---TE---PVAVQAEQTLYVNFFSLTSTCEILFPIVKNGGRVINVSSSAGHL 514
+ TE ++ ++ LY N +L+S I V GR+ VSSS G L
Sbjct: 143 VPESHLITERSMKTQIKWKEILYQNPINLSSQDTIGVICVDKNGRIAVVSSSGGLL 198
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 74 YEKKMSTKVAVVIGANKGIGFAIVRGL 154
+E+KM+ V +V G + GIG +V L
Sbjct: 69 WERKMNGMVVMVTGGSSGIGQVVVEKL 95
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 308 CNPENFPRFSCLLYQVGGSSGLSLRFSKFPL-LFSHALRH 192
C P P+ S ++YQ GL + F+ L +H + H
Sbjct: 509 CKPGGKPQLSSMMYQRSADMGLGVPFNIASYSLLTHMIAH 548
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 332 DILINNAAIAFKQNATEPVAVQAEQTLYVNF-FSLTSTCEILFPIVKNGGRVINVSSSA 505
DI++N I K ATEP+ +LY +F +++ +P++ GR + SA
Sbjct: 353 DIIMNYLLIPLKMLATEPIVFLV--SLYCSFVYAIIYLLLEAYPVIFQEGRHFPLGVSA 409
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -3
Query: 280 LVCYIKLVVARV*AFVFQSFH--CYFPTLFVTRC 185
++C+ L V R A QS H +F F+T C
Sbjct: 288 IICFFALFVVRFFAITIQSIHLGLWFCFFFLTAC 321
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 480 LPPFLTMGNSISQVDVNEKKLTYKVCSA*TATGSVAFCLNAMAAL 346
+PP + + S+ VD+ + +LT++ S A G + F N +A +
Sbjct: 576 VPPLIVVDRSVIPVDICDIRLTFQSMS---AMGHLTFLDNRIAVV 617
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 438 QLVRYCSP*LKMVGGLLTCLVVPVTLAEFQVKT*GINSKTPN 563
Q+V Y L M+G LL V PVT + V T +NS N
Sbjct: 569 QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPT--LNSSIRN 608
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,740
Number of Sequences: 5004
Number of extensions: 57485
Number of successful extensions: 189
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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