Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4f05
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    58   1e-10
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.49 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 57.6 bits (133), Expect = 1e-10
 Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 4/188 (2%)
 Frame = +2

Query: 77  EKKMSTKVAVVIGANKGIGFAIVRGLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPSY 256
           E+    +VA+V GAN GIG  ++  L  +    + +  + ++  K  VE LK++      
Sbjct: 2   EQNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKM-KTLVEELKSKPGKLVP 60

Query: 257 HQLDITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLT 436
            Q D++N+  +    ++++     IDILINNA I           +  ++   +N   LT
Sbjct: 61  LQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLT 120

Query: 437 STCEILFPIVK----NGGRVINVSSSAGHLSRIPSENLRNKLKDSKLTLPELIALMQKYV 604
              + +  ++K    N G ++N++ ++G L+ +P    R     SK  L  L   ++  +
Sbjct: 121 CMIQEVLKLMKKKGINNGIIVNINDASG-LNLLPMNRNRPAYLASKCALTTLTDCLRSEL 179

Query: 605 DDAKQGIQ 628
              +  I+
Sbjct: 180 AQCESNIK 187


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 376 CVLFKCYGCIIYQNINSFIFGFYVIPKTFHAFLVCYIKLVVARV*AFVFQSFHCYF 209
           CV+ + +   IY  + SF    +V+ + ++       ++V+    A      HCYF
Sbjct: 194 CVVCQNFFYQIYATLGSFYIPLFVMIQVYYKIFCAARRIVLEERRAQSHLEAHCYF 249



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 486 ITLPPFLTMGN 454
           I+LPP L MGN
Sbjct: 172 ISLPPLLIMGN 182


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 335 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 472
           IL+ ++ I F  + NA  P  V    T  +NFF+ ++      P+V N
Sbjct: 313 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 359


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 335 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 472
           IL+ ++ I F  + NA  P  V    T  +NFF+ ++      P+V N
Sbjct: 282 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 328


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 335 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 472
           IL+ ++ I F  + NA  P  V    T  +NFF+ ++      P+V N
Sbjct: 333 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 379


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 335 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 472
           IL+ ++ I F  + NA  P  V    T  +NFF+ ++      P+V N
Sbjct: 282 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 328


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 241 AFVFQSFHCYFPTLFVTRCQIN 176
           +F  Q FHCY P  F  +   N
Sbjct: 421 SFFQQFFHCYCPVRFGRKADPN 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,329
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)