Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4f01
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    33   0.041
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    33   0.054
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    29   0.66 
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    28   1.2  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   1.2  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.5  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   2.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.5  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   3.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.7  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   4.7  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +1

Query: 424 KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDY 603
           +L  S  +L ++      S  S  S L+ +  +E +    +  V++ CE  F  +    Y
Sbjct: 144 ELNFSTEELSSFDTTLLNSDTSKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSY 203

Query: 604 LSGEFLDEQYKGQRD-LAGKASTLKKMMDKTRR 699
           L      E  KG+ D L  + + LK+ +DK  +
Sbjct: 204 LKENLKSELRKGRLDELMCENTALKEKIDKLNK 236


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 571 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKTRR 699
           S   DYHL++ L      E YK QR   GK   LK+++  T +
Sbjct: 31  SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRILMHTEK 73


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 571 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKTRRPR 705
           S   D H VD L+G  L  +   +R++A      ++   K R+PR
Sbjct: 11  SDLMDEHSVDLLNGSILAAENPSKREVAQDVPGFERKPTKVRKPR 55


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 437 P*PTSSRTGPPQTRRGRAAHQPSSTPSSWRV 529
           P PT+     P+  RG+A ++PS    +W++
Sbjct: 337 PVPTNVVKANPRVNRGKAGYEPSENIINWKI 367


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 505 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 651
           E   +L   V N I  ++KTC +S ND  ++  DY+S +    + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 496 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 633
           S L+   K +S+  N IR +I   E++    H    +S  FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 534 HQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 644
           H QH   H+  +E L+   PG +     P  + Q PT
Sbjct: 196 HHQHIQAHEMAQESLETRNPGNISSSSAPLASDQSPT 232


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 285 NPVLSHG-GLLLDRYGEPPRLREAILRC 365
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 517 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 630
           ++E DV  S++        +  DYH    LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 618 PRRTVQGPTRPRRQGLDPQEDDGQNTP 698
           P+RT   P  P+R G+ PQ   G   P
Sbjct: 731 PQRTGMQPMAPQRTGMQPQMTGGPMLP 757



 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 540 QHPGGHQDLREQ---LQRLPPGRLFVRG--IPRRTVQGPTRPRRQGLDPQ 674
           Q PG  Q +  Q   +Q + P R  ++    P+RT   P  P+R G+ PQ
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQ 627


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +1

Query: 517 KLESDVTN-SIREVIKTCESSFNDYHLVD----YLSGEFLDEQYKGQRDLA-GKASTLKK 678
           K+ ++V   S+ E +KT E +  DYH       Y+  EF   +Y  +R L  G  ST+  
Sbjct: 38  KVNAEVDGKSMVEKVKTHEENAEDYHYGGYHPVYIGEEFHHRRYVVERKLGWGHFSTVWL 97

Query: 679 MMDKTRRPRRVHL 717
             D+  + RRV L
Sbjct: 98  AYDRAAK-RRVAL 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,616
Number of Sequences: 5004
Number of extensions: 48543
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)