Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e22
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4386| Best HMM Match : DUF771 (HMM E-Value=6.7)                     31   0.95 
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     30   1.7  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    28   6.7  
SB_1621| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_4386| Best HMM Match : DUF771 (HMM E-Value=6.7)
          Length = 133

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -2

Query: 454 VSD*TCFINRILTCK----EHILYNNNNMTFKLLRIHSIGP 344
           +SD  CF +RIL  K    + I+Y +N+   K LRIH   P
Sbjct: 53  ISDFDCFDSRILDFKWIAIDAIVYLSNHADLKYLRIHGFAP 93


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -2

Query: 454 VSD*TCFINRILTCK----EHILYNNNNMTFKLLRIHSIGPCCSLL 329
           +SD  CF  RI   K    + I+Y +N+   K+LRIH   P  S+L
Sbjct: 263 ISDFDCFDGRISDFKLISIDAIVYLSNHADQKILRIHGFAPKISVL 308


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 102 NLLLAVIFSLAVIKCCDAEHNEIPCMTYAGGVC 200
           NL +    +  V +CCD  H ++  M+Y G  C
Sbjct: 77  NLGIVANMTDCVQRCCDVLHCDLAMMSYGGRTC 109


>SB_1621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 235 TSVPVGQLP-TFRQTPPAYVIHGISLCSASQH 143
           +S+P G +P TF+  PP Y +  I    + QH
Sbjct: 469 SSMPRGSMPHTFKSVPPTYTLEQILTRRSDQH 500


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 259 KGQSPFIVTSVPVGQLPTFRQTPPAYVIHGISL 161
           +G+SP  +  +P    PTF+Q   A +I+ + +
Sbjct: 220 EGKSPLALAGIPTHNTPTFKQAAKAPLINTLGI 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,103
Number of Sequences: 59808
Number of extensions: 343499
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)