Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e22
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 31 0.63
U23514-10|AAK95879.1| 301|Caenorhabditis elegans Long protein 1... 30 1.1
AF022979-6|ABD94088.1| 94|Caenorhabditis elegans Hypothetical ... 29 2.6
U64848-5|AAB04884.1| 330|Caenorhabditis elegans Hypothetical pr... 29 3.4
U23514-9|AAC46538.1| 312|Caenorhabditis elegans Long protein 1,... 28 4.5
Z68316-7|CAM35840.1| 310|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z71185-6|CAI46563.1| 286|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z68113-1|CAA92151.1| 321|Caenorhabditis elegans Hypothetical pr... 27 7.8
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +3
Query: 189 GGVCRKVGNCPTGTEV---TIKGLCP 257
G +C + +CP G EV TI GLCP
Sbjct: 1041 GNICCPINSCPNGGEVLGPTINGLCP 1066
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +3
Query: 189 GGVCRKVGNCPTGTEV---TIKGLCP 257
G +C + +CP G EV TI GLCP
Sbjct: 383 GNICCPINSCPNGGEVLGPTINGLCP 408
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +3
Query: 189 GGVCRKVGNCPTGTEV---TIKGLCP 257
G +C + +CP G EV TI GLCP
Sbjct: 383 GNICCPINSCPNGGEVLGPTINGLCP 408
>U23514-10|AAK95879.1| 301|Caenorhabditis elegans Long protein 1,
isoform b protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 162 NEIPCMTYAGGVCRKVGNCPTGTEVTIKGLC 254
N +P T+A G K NCP +GLC
Sbjct: 214 NTMPAFTWASGDNGKCSNCPANAPACYQGLC 244
>AF022979-6|ABD94088.1| 94|Caenorhabditis elegans Hypothetical
protein T02B11.8 protein.
Length = 94
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = +3
Query: 144 CCDAEHNEIPCMTYAGGVCRKVGN--CPTGTEVTIKGLC 254
CC + + C + GG C N CP G T G C
Sbjct: 40 CCPIGNEQYGCCPFTGGTCCPGTNHCCPPGFSCTTIGTC 78
>U64848-5|AAB04884.1| 330|Caenorhabditis elegans Hypothetical
protein C50E3.9 protein.
Length = 330
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -2
Query: 442 TCFINRILTCKEHILY--NNNNMTFKLLRIHSIGPCCSLLIKELA*DLGFRTDRQHSTSS 269
T I RI CK L N N+ + R+ I PC SL+I L + + + +
Sbjct: 240 TSQIERIFQCKFGFLDFGKNENIQMIINRVTLIFPCVSLIIGYLIFRMSLKKRTSGAANH 299
Query: 268 SCCKGQ--SPFIVTSV 227
S CK + P VT++
Sbjct: 300 SKCKEKIVLPIFVTTL 315
>U23514-9|AAC46538.1| 312|Caenorhabditis elegans Long protein 1,
isoform a protein.
Length = 312
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 168 IPCMTYAGGVCRKVGNCPTGTEVTIKGLC 254
+P T+A G K NCP +GLC
Sbjct: 227 MPAFTWASGDNGKCSNCPANAPACYQGLC 255
>Z68316-7|CAM35840.1| 310|Caenorhabditis elegans Hypothetical
protein K08E4.8 protein.
Length = 310
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 407 FFASKNSINKTCLIRHDLLTFVTYYLSI 490
F+ N TC +R+DLL Y+L++
Sbjct: 53 FYLETNDCTNTCSVRYDLLPGYVYWLNL 80
>Z71185-6|CAI46563.1| 286|Caenorhabditis elegans Hypothetical
protein C35A5.10 protein.
Length = 286
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 186 AGGVCRKVGNCPTGTEVTIKGLC 254
+GGVCR G CP+G +C
Sbjct: 195 SGGVCRNNGVCPSGHSCVAGNVC 217
>Z68113-1|CAA92151.1| 321|Caenorhabditis elegans Hypothetical
protein E03G2.1 protein.
Length = 321
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 602 FCTITYVFNYIIHYNMYITMIHNYNKIS*YDWYEYIFKSINN 477
FC Y++ YI Y +YI + ++ +I + + IF + N
Sbjct: 82 FCAYIYIYIYIYVYGLYIFIAQSHKQI--FSKFNIIFCLLEN 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,221
Number of Sequences: 27780
Number of extensions: 271766
Number of successful extensions: 690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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