Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e20
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 31 0.14
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.43
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.0
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.1
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 5.3
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 7.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.3
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.3
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.3
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 9.3
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 9.3
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 9.3
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 31.1 bits (67), Expect = 0.14
Identities = 21/86 (24%), Positives = 44/86 (51%)
Frame = -1
Query: 633 GPLGLKSFDAVGPVGHVVMVRGCLNCQRQILITLSVHNLEVDLVVLPQRNELPADFWTRL 454
GP GL + D + GH V++ + + L+ + N+++D V+ +R +L D +
Sbjct: 1764 GPAGLAAADQLNRAGHHVVIYERAD-RPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822
Query: 453 VLAIAVGKSAIVAVLIVQRQSETVAL 376
+ + VGK+ V++ + + + V L
Sbjct: 1823 LTNVEVGKNGDVSLDELHKVYDAVVL 1848
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.5 bits (63), Expect = 0.43
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 175 EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 306
+K I + +KS + ++ K+++ NK+N +E A Q W + K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.0
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 89 MPRKPQSPTPNSK---TIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR* 259
+P S TP S T T+ASS P+T++ ST T A S+ +S +S +T
Sbjct: 282 LPSSTPSSTPLSSANSTTATSASSTPLTSV------NSTTTTSASSTPLSSVSSANSTTA 335
Query: 260 TAW-STPTS 283
T+ STP S
Sbjct: 336 TSTSSTPLS 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 122 SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSKA 298
+ T T+ASS P+T++ A ++ T + S T++ T +A S T TS S A
Sbjct: 347 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTA 406
Query: 299 P 301
P
Sbjct: 407 P 407
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 122 SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSKA 298
+ T T+ASS P+T++ A ++ T + S T++ T +A S T TS S A
Sbjct: 461 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTA 520
Query: 299 P 301
P
Sbjct: 521 P 521
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 202 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 294
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 145 ILVADYDHSVEKSKQIYEDKKSEVITNVVN-KLIRNNKMNCMEYAYQLWLQGSKDIVREC 321
+LV + + E+S + + + N+ KL NN +E Q +LQG K+ +++C
Sbjct: 152 VLVIELLETQERSSKRRRREGPTMKANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIKKC 211
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 121 LEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNN 252
LE+D + ++ + ++ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.3
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 107 SPTPNSKTIFT-TASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTS 283
S +P+S + T T+SSL ++IP ++ S+ + SS S T S ++ + S+ +S
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278
Query: 284 YGS 292
S
Sbjct: 279 SSS 281
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 397 TLDDENSNDGRLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIV 525
T DD + ++ + GKD +PK +W P+W+ K+Y +V
Sbjct: 77 TEDDSGEDSYQVEWESGKDPLAPK-NW---PMWK--KIYTLLV 113
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 91 AKETSVSDSK--LEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNC 264
AKE S S + LE V E++KQ+ K+SE++ + NKL+ N ++
Sbjct: 639 AKEDSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIES 698
Query: 265 M 267
+
Sbjct: 699 L 699
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 9.3
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = +2
Query: 152 LPITTIPLKRANRSTRTRRAKSS-------QMS*TNSYETTR*TAWSTPTSYGSKA 298
LP+T PL+ AN S + + Q+S T S T TA S P Y S A
Sbjct: 271 LPVTKTPLEEANSSPAAQNQHITTVDHVHPQVSMTPSLSTNN-TATSVPAPYSSAA 325
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 189 DLR-GQEERSHHKCRKQTHTKQQDEL 263
D+R GQEE + HT QQDEL
Sbjct: 7 DIRNGQEEDDLFSENEDNHTSQQDEL 32
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 575 TITTWPTGPTASKDLRPNGPCSP 643
T + P P +SKD+RP P P
Sbjct: 692 TFSVRPPYPPSSKDIRPEAPWLP 714
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,165
Number of Sequences: 5004
Number of extensions: 43767
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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