Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e20
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 30 1.4
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94) 29 2.4
SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12) 29 3.2
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17) 29 3.2
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15) 28 7.5
SB_377| Best HMM Match : IQ (HMM E-Value=0.0002) 28 7.5
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 73 FVASLYAKETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVIT 222
F ASL A++ S SDS EDDL ++ + DH K++ + + +K + T
Sbjct: 548 FRASLAAQQDSTSDSSSEDDL----IMDEKDHPQGKARSLSDKQKCKNTT 593
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/84 (28%), Positives = 35/84 (41%)
Frame = +2
Query: 212 KSSQMS*TNSYETTR*TAWSTPTSYGSKAPKIXXXXXXXXXXXXXXQKTTLS*CTSATVS 391
K+ + + T TTR T T T+ +K P I TT T+AT +
Sbjct: 1419 KTREEATTKPTTTTRKTTIPTTTASETKPPTIRKTTTATTTVPATKPPTTRK-TTTATTT 1477
Query: 392 L*RWTMRTATMADLPTAMARTRRV 463
R T + T A+ PT + RR+
Sbjct: 1478 QGRTTRKPTTTAEPPTTVDNLRRI 1501
>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
Length = 592
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +3
Query: 144 HPRCRLRPFR*KEQTDLRGQEERSHHK----CRKQTHTKQQDELHGVRLPAMAPRLQRYR 311
HP +R +R Q RG+ ER HH CR +T Q + + ++RYR
Sbjct: 145 HPGVAIRRYR-TRQVSQRGERERRHHPEVAICRYRTRQTGQSTRRTRKTTSSGVAIRRYR 203
>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
Length = 734
Score = 29.1 bits (62), Expect = 3.2
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Frame = +1
Query: 103 SVSDSKLEDDLYNSILVADYDHSVEKSK-QIYEDKKSEVI--TNVVNKLIRNNKMNCMEY 273
S+S+S E+ N D S E + Q+ +D K + + ++ NK + +K++ E
Sbjct: 340 SLSESSSENIKVNVSSDDDKGGSEEPQQHQLADDDKEDRLDTSDAENKQVEEDKIDEKER 399
Query: 274 AYQLWLQGSKDIVRECFPVEFRLIFAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKD 453
+ GSK E +E L +EN L GLA+ +D E SN + D
Sbjct: 400 ENVVEQVGSKG-QNEAMTLENAL--SENKENLNQGTSGLAVVVDQEQSNGELIKEKAEND 456
Query: 454 KTS 462
TS
Sbjct: 457 STS 459
>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
Length = 355
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 375 QARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 506
Q R +F++ +QQ+WQ R+WQ Q +SQLE + E Q
Sbjct: 292 QQSRQQFEL---QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331
>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 235 KLIRNNKMNCMEYAYQLWLQGSKDIVRECF 324
+L NN+M +A+ WL+G + R+C+
Sbjct: 17 RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +2
Query: 74 SWRLCMPRKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETT 253
+W++ + T ++ T+ +T SS +TT R+ + A S + + T+
Sbjct: 2766 TWKIEQRERHAKTTTSASTVDSTGSSKAVTTTVAATTTRTIQAAPASSDNTAANKAQSTS 2825
Query: 254 R*TAWSTPTSYGS 292
T+ +S GS
Sbjct: 2826 SATSSEQTSSSGS 2838
>SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 64 LCLFVASLYAKETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSE 213
L +F+ Y K + +DSK E A HS EK K+I +++KSE
Sbjct: 81 LAVFLKERY-KPSQETDSKPEKSETRRESRAKSSHSKEKEKEIRKEEKSE 129
>SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15)
Length = 257
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +1
Query: 145 ILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQ 282
I++A +D S ++S IY+ + NV+N+ +R ++ M + ++
Sbjct: 84 IIIAGFDKS-DRSLTIYQALPGNLEGNVINRSVRKQVIDAMNFDFR 128
>SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)
Length = 1376
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +2
Query: 95 RKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWST 274
R PQ TP + F +L +T+ PLK + R + S S +++
Sbjct: 1274 RTPQDITPTANAAFFPPEALALTSTPLKPRTENKSVRPSSESHQGSAGS------EGYAS 1327
Query: 275 PTSYGSKA 298
PT G A
Sbjct: 1328 PTEQGVSA 1335
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,214
Number of Sequences: 59808
Number of extensions: 342013
Number of successful extensions: 1215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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