Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e20
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    29   2.1  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    29   3.7  
AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AB291062-1|BAF73936.1|  157|Caenorhabditis elegans dihydrofolate...    28   6.5  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.     27   8.6  

>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +1

Query: 85  LYAKETSVSDSKLEDDLYNSILVADYDHSVEK--SKQIYE-DKKSEVITNVVNKLIRNNK 255
           +YA+  S  D  LE DL+N   + +Y+H + K   +++++  KK E   NV+N+ I    
Sbjct: 318 MYAQSDSSLDHLLEWDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREIHRRD 377

Query: 256 MN 261
           ++
Sbjct: 378 VS 379


>AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical
           protein Y73B3B.1 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 94  KETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 210
           ++ ++SD K+  DL +SI     DHS+ KS +  EDK S
Sbjct: 275 QDPAISDGKVVLDLIDSIKPNVIDHSLVKSGKSNEDKMS 313


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
 Frame = +2

Query: 47  KPFKLFCVFSW------RLCMPRKPQ-SPTPNSKTIFTTASSLPITTIPLKRANRSTRTR 205
           KP+ + C F+        +C P KP+ S T  + T  TT ++ P TT        +T T 
Sbjct: 59  KPYNIDCPFAIPPITFNAVCDPSKPKPSTTTTTTTTPTTTTTTPTTTTTTPTTTTTTPT- 117

Query: 206 RAKSSQMS*TNSYETTR*TAWSTP 277
              ++  + T +  TT  T  STP
Sbjct: 118 -TTTTTPTTTTTTPTTTTTTRSTP 140


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 107 SPTPNSKTIF--TTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPT 280
           +PT  ++T    TT ++ P TT P      +T T  AK+++ + T + +TT+ T+  T T
Sbjct: 258 TPTTTTQTTTKPTTTTTTPTTT-PTTTTTPTTTTTTAKTTKST-TTTTKTTKTTSTPTTT 315

Query: 281 SYGSKAP 301
           +   K P
Sbjct: 316 TTTPKTP 322


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
 Frame = +2

Query: 77  WRLCMPRKPQSPTPNSK-----TIFTTASSLPITTIPLKRANRST---RTRRAKSSQMS* 232
           W    PRK   P   ++     T+ TT++S  ++T   +    +T    T   +SS  S 
Sbjct: 95  WITAPPRKTPVPITTTREQTTTTLRTTSASTTLSTTQPQTTTTTTIPSTTTMTESSSTST 154

Query: 233 TNSYETTR*TAWSTPTSYGS 292
           T S  TTR   W+  T Y S
Sbjct: 155 TASPTTTRIRTWTYTTRYPS 174


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
 Frame = +2

Query: 77  WRLCMPRKPQSPTPNSK-----TIFTTASSLPITTIPLKRANRST---RTRRAKSSQMS* 232
           W    PRK   P   ++     T+ TT++S  ++T   +    +T    T   +SS  S 
Sbjct: 95  WITAPPRKTPVPITTTREQTTTTLRTTSASTTLSTTQPQTTTTTTIPSTTTMTESSSTST 154

Query: 233 TNSYETTR*TAWSTPTSYGS 292
           T S  TTR   W+  T Y S
Sbjct: 155 TASPTTTRIRTWTYTTRYPS 174


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 190 IYEDKKS-EVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIK 366
           + +DK    ++  V+++L  N K+ C ++  QL       IVR C+ +     FA   I+
Sbjct: 248 VCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQ 306

Query: 367 LMYKRDGL 390
            + K  G+
Sbjct: 307 YVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 190 IYEDKKS-EVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIK 366
           + +DK    ++  V+++L  N K+ C ++  QL       IVR C+ +     FA   I+
Sbjct: 248 VCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQ 306

Query: 367 LMYKRDGL 390
            + K  G+
Sbjct: 307 YVIKSSGI 314


>AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical
           protein Y104H12BR.1 protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 94  KETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 210
           ++ ++SD K+  DL ++I     DHS+ KS +  EDK S
Sbjct: 107 QDPAISDGKVVLDLIDAIKPNVIDHSLVKSGKSNEDKMS 145


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 101 PQSPTPNSKTIFTTAS-SLPITTIPLKRANRSTRTR 205
           PQ P P  +T  T    +LP TT+P+   N++ RT+
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRTK 797


>AB291062-1|BAF73936.1|  157|Caenorhabditis elegans dihydrofolate
           reductase protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 133 LYNSILV-ADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQG 297
           +YNS++  AD  H      ++  D K  ++    N +     M+ + Y YQ+W +G
Sbjct: 102 IYNSLIEKADIIHLSTVHVEVEGDIKFPIMPENFNLVFEQFFMSNINYTYQIWKKG 157


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +2

Query: 113 TPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTSYGS 292
           T  + TI T+ +++  TT+   +A  +T+T  + ++    T + +TT+    ++PTS  +
Sbjct: 215 TTKAATIKTSTTTVTPTTVTTTKAPTTTKTSTSTTTPKFTTTTIQTTK-KITTSPTSTTA 273

Query: 293 KAP 301
             P
Sbjct: 274 SIP 276


>Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical
           protein K08H2.1 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +1

Query: 196 EDKKSEVITNVVNKLIRNNK---MNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIK 366
           +D    ++T    + IR N    ++  E A++L + G  D+   C  V   L    N +K
Sbjct: 73  QDHAQRILTAWDVQFIRTNSAILLHLAEAAFRLEIVGLLDVA--CRAVSIMLGRTLNEVK 130

Query: 367 LMYKRDGLALTLDDENS 417
           LM +  G+    D+E+S
Sbjct: 131 LMLRVGGVESPSDEEDS 147


>Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical
           protein F08G12.1 protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 76  VASLYAKETSVSDSKLEDDLYNSILVADYDHSVE---KSKQIYEDKKSEV 216
           +  L   ++ +  S  E D Y     ADYD  +E   + ++ Y DKKSE+
Sbjct: 250 IRQLETNKSEIVSSYHELDCYQETPEADYDTFIELVNQKRREYADKKSEM 299


>AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +1

Query: 196 EDKKSEVITNVVNKLIRNNK---MNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIK 366
           +D    ++T    + IR N    ++  E A++L + G  D+   C  V   L    N +K
Sbjct: 69  QDHAQRILTAWDVQFIRTNSAILLHLAEAAFRLEIVGLLDVA--CRAVSIMLGRTLNEVK 126

Query: 367 LMYKRDGLALTLDDENS 417
           LM +  G+    D+E+S
Sbjct: 127 LMLRVGGVESPSDEEDS 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,537
Number of Sequences: 27780
Number of extensions: 249858
Number of successful extensions: 1123
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)