Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e19
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0270 + 28048449-28048577,28048915-28048978,28049537-280496...    29   3.8  
09_06_0355 - 22492162-22492311,22492414-22492698,22492798-224931...    28   6.7  
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289...    28   6.7  

>01_06_0270 +
           28048449-28048577,28048915-28048978,28049537-28049638,
           28049971-28050021,28050075-28050172,28050395-28050485,
           28050718-28050782,28050913-28051107,28051207-28051326,
           28051592-28051662,28051787-28052012,28052330-28052407,
           28052507-28052735,28052958-28053097,28053571-28053699
          Length = 595

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 558 RLPQQEARGGLPPTQIVDRQRDSY 487
           +LPQ   +GG P   I DR  DSY
Sbjct: 479 KLPQDVEKGGNPTNSIFDRYNDSY 502


>09_06_0355 -
           22492162-22492311,22492414-22492698,22492798-22493125,
           22493523-22493674,22493878-22493969,22495948-22496107
          Length = 388

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/67 (17%), Positives = 30/67 (44%)
 Frame = +3

Query: 159 EDIIEILHRPEYVSENSIQYASPTRTTLDCVICRSAFRTAIQGLKAGQTEEELSNVISTL 338
           ++++++ H         +  + P +T L C +CR      +  +K    E+E   ++ + 
Sbjct: 8   DEVVQVRHGDVAGEPTVVTISCPDKTGLGCDLCRLVLLFGLNIVKGESKEKEKGILVGSR 67

Query: 339 CITLGIA 359
            I + +A
Sbjct: 68  AIAIAMA 74


>05_07_0063 -
           27428056-27428184,27428321-27428460,27428698-27428926,
           27429231-27429281,27429411-27429636,27430230-27430300,
           27430466-27430585,27430671-27430865,27431088-27431152,
           27431232-27431322,27431607-27431707,27431767-27431817,
           27432076-27432177,27432406-27432510,27432600-27432663,
           27433023-27433151
          Length = 622

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 558 RLPQQEARGGLPPTQIVDRQRDSY 487
           +LPQ   +GG P   I DR  DSY
Sbjct: 506 KLPQDVEKGGNPSHSIFDRYNDSY 529


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,644,344
Number of Sequences: 37544
Number of extensions: 332021
Number of successful extensions: 860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)