Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e19
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_31767| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 656 FIAISHSESFIKRIEMSVGDYRNRQWFSFENW 561
           +I IS SES +KR   +  D   R+W +F  W
Sbjct: 305 YIDISSSESTVKRNTTNTADQTRRKWITFRQW 336


>SB_31767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 696 NYLQVFVLFYSIPVHRNQPLRKLHKEDRDER 604
           NYLQ  + FY I V   +  + LH +D D+R
Sbjct: 96  NYLQSLLEFYGIHVKMFRFQKLLHSDDNDDR 126


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 716  MCDLVNVITCRSLSYSTAYRFIAISHSESFIKRIEMSVGDYRNR 585
            +CDL NV+   +   +  + F   +H++ F+  IE     YR R
Sbjct: 3410 VCDLRNVVAVFAADRTHNFEFAESAHAQMFVTMIEGPALHYRYR 3453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,144,019
Number of Sequences: 59808
Number of extensions: 399963
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)