Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e19
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23453-4|AAC46756.2|  564|Caenorhabditis elegans Acid sphingomye...    47   1e-05
AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid sphingom...    39   0.003
Z66567-4|CAA91493.2|  618|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z80789-3|CAB02553.1|  364|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AY008129-1|AAG32082.1|  364|Caenorhabditis elegans heterotrimeri...    29   3.4  

>U23453-4|AAC46756.2|  564|Caenorhabditis elegans Acid
           sphingomyelinase protein 1 protein.
          Length = 564

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 9/152 (5%)
 Frame = +3

Query: 246 CVICRSAFRTAIQGLKAGQTEEELSNVISTLCITLGIAGYGVCKGAVSLNIPIIRYIVKN 425
           C+ C      A   LK   +E  +    + +C       + VC G  S       Y+ + 
Sbjct: 41  CISCTGLISVASFFLKFDVSEPVILEFATIVCKLFAKQPWAVCDGISSQFRDEFFYVFRR 100

Query: 426 EPQATAEAFCGLVLQNVGNPNNCPFDDQRFEWEVTLXXXXXXXXXXX--FETKP------ 581
               +    CG++L +  +P     D     W V L              + KP      
Sbjct: 101 LANESPSQICGIILPDCADPT----DPSESGWMVALPPKPKRTRISKKKVQKKPNMSMSQ 156

Query: 582 -LTIAIITDAHLDPLYEAFGVADCDEPVCCRI 674
            L +  +TD H+D  Y+    A+CD+PVCCR+
Sbjct: 157 NLNVLQLTDLHVDFEYKYPSEANCDDPVCCRV 188


>AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid
           sphingomyelinase protein 3 protein.
          Length = 589

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 5/153 (3%)
 Frame = +3

Query: 228 TRTTLDCVICRSAFRTAIQGLKAGQTEEELSNVISTLCITLGIAGYGVCKGAVSLNIPII 407
           T    +C  C+S            +TEE +  +   +C T  I    VC   +S      
Sbjct: 15  TLAVTECEECKSIVDLLQFEWGEKKTEECVMEIAVFICETFHIEDNDVCNFIISDFSDEF 74

Query: 408 RYIVKNEPQATAEAFCGLVLQNVGNPNNCP--FDDQRFEWEVTLXXXXXXXXXXXFET-- 575
            Y++K +   T    CGL+++N     +C    D     W +T+                
Sbjct: 75  MYVIK-QILVTPHQLCGLLMKN-----DCGDFVDPLATIWNMTIPGNQPPFVPKQVVPPG 128

Query: 576 KPLTIAI-ITDAHLDPLYEAFGVADCDEPVCCR 671
            P   A+ +TD H+D  Y     ADC  P CCR
Sbjct: 129 NPTLRALHLTDLHVDMFYTVGLEADCGTPQCCR 161


>Z66567-4|CAA91493.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK455.4 protein.
          Length = 618

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 4/146 (2%)
 Frame = +3

Query: 225 PTRTTLDCVICRSAFRTAIQGLKA-GQTEEELSNVISTLCITLGIAGYGVCKGAVSLNIP 401
           P    + C+ C  A    +Q L A   T+ E++  +  LC    +    VCK  +     
Sbjct: 65  PENRKMSCLFCTFAV-DGVQALIAQNSTDNEIAAFLVNLCDLFDVEQPHVCKNIIYAFKD 123

Query: 402 IIRYIVKNEPQATAEAFCGLVLQNVGNPNNCPFDDQRFEWEVTLXXXXXXXXXXXF--ET 575
            + ++++     T E  CG  + N G+ +  P       W +T+              + 
Sbjct: 124 EVVFVLERS-VFTPEEICGAFIANCGHSDK-PLTHM---WNITIPGGKPPIKPWPKIPDN 178

Query: 576 KP-LTIAIITDAHLDPLYEAFGVADC 650
           KP   +  ++D H+D  Y     A C
Sbjct: 179 KPTFKVLHLSDIHIDHQYVVGTEAYC 204


>Z80789-3|CAB02553.1|  364|Caenorhabditis elegans Hypothetical
           protein F48C11.1 protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 72  NRLISLETVEDVLK-KILVNDLSEEDKSLLEDIIEILHRPEYVSENSIQYAS 224
           +R +S +  +D+ + KIL+   +E  KS +   + +LH   Y  E++++Y S
Sbjct: 28  DRALSKDHTDDLNRFKILLLGTAESGKSTIFKQMRVLHLDGYAKEDALEYLS 79


>AY008129-1|AAG32082.1|  364|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 72  NRLISLETVEDVLK-KILVNDLSEEDKSLLEDIIEILHRPEYVSENSIQYAS 224
           +R +S +  +D+ + KIL+   +E  KS +   + +LH   Y  E++++Y S
Sbjct: 28  DRALSKDHTDDLNRFKILLLGTAESGKSTIFKQMRVLHLDGYAKEDALEYLS 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,765
Number of Sequences: 27780
Number of extensions: 308786
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)