Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e16
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 55 1e-08
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 50 5e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 46 4e-06
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 46 8e-06
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||... 45 1e-05
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 38 0.002
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 37 0.004
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 34 0.025
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 33 0.034
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 31 0.18
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 29 0.96
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 28 1.3
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 28 1.7
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 27 2.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 3.9
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 3.9
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 27 3.9
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 26 6.7
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 26 6.7
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 25 8.9
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 55.2 bits (127), Expect = 1e-08
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +3
Query: 90 STGLKMATQVQALYDFTGEPGTTEMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAA 269
+T K +V A+YDF G P ++ GEV+ +L + WW G+ NG+ G+FP+
Sbjct: 136 NTAHKNVERVLAMYDFPG-PDAGDLGFHAGEVIIVLE-HVNNDWWRGEL-NGKEGIFPSN 192
Query: 270 YVRKLTPEESIQTKAAPPAPR 332
YVR L + +++ + PP P+
Sbjct: 193 YVR-LLEDSAVKAQPPPPPPQ 212
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 49.6 bits (113), Expect = 5e-07
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = +3
Query: 105 MATQ--VQALYDFTGEPGTTEMSITCGE--VLTLLNTEIGEGWWEGKKSNGETGLFPAAY 272
MA+Q V AL+ F G+ + E+ + G +L ++ E G+GWWEG+ G G+FPA++
Sbjct: 1 MASQRFVIALHSFPGK-SSDELPLVEGRKYLLIKMDEEFGDGWWEGEDEQGNRGIFPASH 59
Query: 273 VRKLTPEES 299
V ++ E S
Sbjct: 60 VELISDERS 68
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 46.4 bits (105), Expect = 4e-06
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 111 TQVQALYDFTGEPGTTEMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAAYVRKLTP 290
T +YD++ E E+ + E + +L + +GWW G+ S G+ GLFP+ YV P
Sbjct: 728 TPAIVIYDYSPEE-ENEIELVENEQIQILEF-VDDGWWLGENSKGQQGLFPSNYVEITGP 785
Query: 291 EESIQTKAAPP 323
E+ A P
Sbjct: 786 NETANNPPAEP 796
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 45.6 bits (103), Expect = 8e-06
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 57 SALKLRFILKNSTGLKM-ATQVQALYDFTGEPGTTEMSITCGEVLTLLNTEIGEGWWEGK 233
S +KL L S L ++ V+ALY +T + E+SI G+++ + N G GW EG
Sbjct: 568 SYVKLNDELNTSVTLDGDSSYVKALYAYTAQ-SDMELSIQEGDIIQVTNRNAGNGWSEG- 625
Query: 234 KSNGETGLFPAAYV 275
NG TG FPA YV
Sbjct: 626 ILNGVTGQFPANYV 639
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 126 LYDFTGEPGTTEMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAAYVR 278
LYDFTGE ++ + G+ TLL + G GW K +G GL PA+YV+
Sbjct: 523 LYDFTGEHEGV-ITASEGQEFTLLEPDDGSGWVR-VKIDGTDGLIPASYVK 571
>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = +3
Query: 120 QALYDFTGEPGTTEMSITCGEVLTLLNTEIGEG----WWEGKKSNGETGLFPAAY 272
+A Y+F EMS+ G+++ +L+ +G WW+G+K +GETG FP+ Y
Sbjct: 228 KADYEFMSRDPGVEMSLKKGDIIAILSKTDTQGNPCEWWQGRKRSGETGWFPSNY 282
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Frame = +3
Query: 117 VQALYDFTGEPGT-TEMSITCGEVLTLLNTEIGEGWWEGKK------SNGETGLFPAAY 272
V+ Y F EP T E+ + G++L +L EI EGWW G+K G TG+FP+ Y
Sbjct: 426 VRMKYSF--EPETENELKLKKGDLLLVLK-EIDEGWWVGEKLGEDGVFTGNTGMFPSNY 481
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 114 QVQALYDFTGE-PGTTEMSITCGEVLTLLNTEIG-EGWWEGKKSNGETGLFPAAYVR 278
Q +A+Y F GE PG ++S G+++ ++ + WW G+ E G+FPA YV+
Sbjct: 375 QARAMYSFAGEQPG--DLSFQKGDIIDIVERSGSHDDWWTGRIGYRE-GIFPANYVK 428
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 33.9 bits (74), Expect = 0.025
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 87 NSTGLKMATQVQALYDFTGEPGTTEMSITCGEVLTLLNTEIGEGWWEG---KKSNGETGL 257
++ G ++ V ALYD+ E+S G+ + +L +GWWEG + + G
Sbjct: 602 STDGQRILGYVSALYDYDAAI-PEEISFRKGDTIAVLKL-YEDGWWEGFVVGEDDHNRGQ 659
Query: 258 FPAAYVRKL 284
FP+ +VR++
Sbjct: 660 FPSNFVREI 668
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 33.5 bits (73), Expect = 0.034
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 108 ATQVQALYDFTGEPGTTEMSITCGEVLTLLN-TEIGEGWWEGKKSNGETGLFPAAYVR 278
A V ALYD+ + ++S G+ + +++ T+ WW G+ NG G FP YV+
Sbjct: 409 AEHVVALYDYAAQ-AAGDLSFHAGDRIEVVSRTDNQNEWWIGRL-NGAQGQFPGNYVQ 464
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 519 PGMPINDYNQHIDDTSSNYSSSVGTVRKNKFAPSSKISGESYLLATLN--VEVPDSEKVY 692
P +PIN + + S+ G V KF +SY +++N V++ +++ Y
Sbjct: 167 PHLPINHQGNTWKHANESLQSNQGPVPNTKFVGLETTQTDSYQQSSVNSVVKIEEADATY 226
Query: 693 IIQDEDG 713
+++E G
Sbjct: 227 ALREESG 233
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 28.7 bits (61), Expect = 0.96
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 449 VCIIFPVIIPAIF--MRNSSLVIVISCTVVLFAPVICCLIIS 330
+C+ FP ++ F +RN+SL+ S +L++ ++C L +S
Sbjct: 67 ICVFFPALVLYGFGKLRNNSLLFWKSLMGLLYSTMVCGLCVS 108
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 600 KNKFAPSSKISGESYLLATLNVEVPDSEKVYIIQDED 710
+N+ A + ISGE + T+ + D E+VY+ Q+ED
Sbjct: 839 ENEHAGAEAISGE-IIPDTVEANMEDEEEVYVKQEED 874
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 27.9 bits (59), Expect = 1.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 134 LHW*AWHHRDVHNLW 178
+H+ W HRD+HN++
Sbjct: 543 IHYGGWEHRDIHNIY 557
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 752 SHNIWLSNWGPNISIFILDNVDLFRVWYFYIKGCQQVAFSTNL 624
+HNI PN +F +DN+ + YFYI+ + F NL
Sbjct: 35 AHNIGHIKLDPNEGLFFVDNL-VNTPTYFYIQRYTALLFQNNL 76
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 513 VIPGMPI----NDYNQHIDDTSSNYSSSVGTVRKNKFAPSSKISG 635
V+P P+ ND N+ DD +S + + ++N+ A S SG
Sbjct: 1442 VVPSKPVVEVFNDLNEAFDDENSEDENGINDTKENR-ATESNFSG 1485
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 336 DQAADDWGEQHYSAGDNNYQRGVS 407
D D+W + HYS D+ ++G S
Sbjct: 72 DNGYDEWDQSHYSDEDDENEKGSS 95
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 576 SSSVGTVRKNKFAPSSKISGESYLLATLNVEVPDS---EKVY 692
SSS+G + PSS IS +LLA L+ +P EK Y
Sbjct: 268 SSSLGDMEFETSQPSSSISEIIHLLAVLDKRIPKKTLVEKTY 309
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 421 GMMTGKMIHTQR*DQPSNKTRHRSTTSNHPL*FPVCLLMII 543
GM TG ++ D+P TR S L FP+C+L+++
Sbjct: 303 GMYTGSVVLA---DRPLMYTRAESWKRFQRLLFPLCILLVL 340
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 522 GMPINDYNQHIDDTSSNYSSSV 587
G P + +N D T+SNYS+SV
Sbjct: 530 GSPTSIFNDLSDHTTSNYSTSV 551
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 145 SPVKSYKACTWVAILRPVLFFSIKRNFKADTPNVQS 38
S + Y AC +V ++ P+L F R K +TP+ +
Sbjct: 449 SKINGYAACAFVLLMVPILCFPQFRG-KDNTPDAMN 483
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 8.9
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = -3
Query: 722 PNISIFILDNVDLFRVWYFYI 660
P + +F+L++V++FR + Y+
Sbjct: 164 PQVQVFVLESVNIFRKYISYL 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,585
Number of Sequences: 5004
Number of extensions: 62558
Number of successful extensions: 204
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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