Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e16
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1697 - 28795521-28797328,28797430-28797550 32 0.43
11_03_0085 - 9717360-9717390,9717478-9717603,9718600-9718666,971... 31 1.0
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574... 31 1.3
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 31 1.3
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 29 3.1
09_04_0373 - 17037945-17040641 29 4.0
02_05_0978 - 33242938-33242988,33243729-33243911,33244458-332445... 28 7.1
09_04_0506 - 18188785-18190599 28 9.3
02_05_1194 - 34881450-34881593,34882023-34882220,34882522-348826... 28 9.3
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 32.3 bits (70), Expect = 0.43
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 225 EGKKSNGETGLFPAAYVRKLTPEESIQTKAAPPAPRYDQAADD 353
EGKKS+ ET P V +L P S+QT + PAP + DD
Sbjct: 190 EGKKSSEETSQSPRRDVVELPPS-SVQTPDSQPAPAVLKREDD 231
>11_03_0085 -
9717360-9717390,9717478-9717603,9718600-9718666,
9718770-9718831,9718904-9719094,9720133-9720268,
9720760-9720851,9721231-9721413
Length = 295
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 215 FSDFCVEQCE-HLSTSYGHLCGARLTS-EVIQSLHLGRHFKTR 93
F DFC+E C+ HL+ S+ L + +S +VIQ L F TR
Sbjct: 91 FLDFCLESCQYHLNVSFHKLRNSTNSSHDVIQGADLSHVFCTR 133
>07_03_0542 -
19256688-19256804,19257181-19257255,19257337-19257426,
19257506-19257568,19257659-19257856,19257973-19258074,
19259276-19259424,19260136-19260205,19260460-19260582,
19261541-19261600
Length = 348
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 120 QALYDFTGEPGTTEMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAAYVRK 281
+A+++F G E+S+ G+ + + GW EG+ G G FPAAYV +
Sbjct: 285 EAVHNFNGTT-EKELSLIVGDYVVVRQIA-PNGWAEGE-CKGVAGWFPAAYVER 335
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 562 HLQIIAHQWAQLEKTNLHHLQRLVEKATCW 651
HL I AH WA ++KT + +L+ L+ + W
Sbjct: 542 HLSISAHLWAGMKKTEMKNLRTLLVWSKSW 571
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 159 EMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAAYVRK 281
E+SI+ G+ + + GW EG+ G+ G FP+AYV +
Sbjct: 339 ELSISVGDYVVVRQVA-PNGWSEGE-CKGKAGWFPSAYVEQ 377
>09_04_0373 - 17037945-17040641
Length = 898
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 510 IVIPGMPINDYNQHIDDTSSNYSSSVGT 593
IVIPGMP Q I +SN+++ VG+
Sbjct: 520 IVIPGMPARFSYQEITTMTSNFATKVGS 547
>02_05_0978 -
33242938-33242988,33243729-33243911,33244458-33244520,
33244656-33246083
Length = 574
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 264 AAYVRKLTPEESIQTKAAPPAPRYDQAADDWG 359
AA R L P + +KAA P P Y+ + WG
Sbjct: 15 AADGRLLLPLAPLSSKAAAPPPEYEMPSVTWG 46
>09_04_0506 - 18188785-18190599
Length = 604
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 282 LTPEESIQTKAAPPAPRYDQAADDWGEQHYSAGDNNYQRG 401
L P+ AAPP P ++Q G+ + G NY G
Sbjct: 130 LPPQPQPPVAAAPPPPPHNQIQPGGGDGFHRQGGGNYGGG 169
>02_05_1194 -
34881450-34881593,34882023-34882220,34882522-34882638,
34882753-34882908,34883192-34883341,34883418-34883527,
34883589-34883730,34883836-34884054,34887004-34887099,
34887187-34887489,34887575-34887624,34888003-34888114,
34888204-34888279,34888389-34888684,34888763-34888872,
34889071-34889120,34890439-34890488,34890636-34890816,
34890901-34890932
Length = 863
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 556 MTHLQIIAHQWAQLEKTNLHH 618
M LQ+I H+ AQL++TN H
Sbjct: 156 MQQLQLIQHRHAQLQRTNASH 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,171,413
Number of Sequences: 37544
Number of extensions: 403840
Number of successful extensions: 1041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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