Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e16
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   4.5  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   4.5  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   7.8  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 154 PQRCP*LVERCSHCSTQKSEKAGGKEKNLM 243
           P +CP   E C   S  +    GGK K L+
Sbjct: 88  PNQCPIGYETCREISITRQIVVGGKNKYLI 117


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 516  IPGMPINDYNQHIDDTSSNYSSSVGTVRKNKFAPSSKISGE 638
            +P +P N   QH  + S  +S+   + +  + APS++ + +
Sbjct: 1217 LPDVPNNQRRQHQPNISLTHSNVRNSYQLTRVAPSNRTNNQ 1257


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 333 YDQAADDWGEQHYSAGDNNYQRGV 404
           +D + D W +  ++  DNN+ RG+
Sbjct: 616 WDCSDDGWPQGFWNDNDNNWLRGL 639


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 806,662
Number of Sequences: 2352
Number of extensions: 16039
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)