Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e15
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.75 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.75 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 134 SLPSAHLFWTTSPQNDSKTQTQR 202
           S PS +   TTSPQ+ S  QT R
Sbjct: 391 SFPSLYPMATTSPQSQSTIQTLR 413


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 226 PTTRTPAMTTSCRRER 273
           PT+ T ++T SCRR+R
Sbjct: 90  PTSTTTSVTPSCRRQR 105


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = +3

Query: 492 LGCFVYIVLG------GCRAVPAGPTAIASLLTWQVAGGVVEKAILLTLLAGIVELMMGV 653
           LGC V  ++G      G  A  +G T   S   WQ A       +L ++  G+V      
Sbjct: 218 LGCPVNAIMGLFVLWWGWLAFNSGSTYGVSGQRWQYAARAAISTMLASMGGGLV------ 271

Query: 654 LGLGFLIN 677
            GLGF +N
Sbjct: 272 -GLGFSLN 278


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 107 AVARGRITRVAGRRESEVRMQSGEH 33
           A  R ++  +AG+   +VR   GEH
Sbjct: 290 AANRAKLEEIAGKFNLQVRGTRGEH 314


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 430 CGMTVRPTVMPAIRSPIAFSALY 362
           CGM + P       SP+A   LY
Sbjct: 252 CGMALSPVTNNLYYSPLASHGLY 274


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 156  SGRPAPKMIPRRKHNASSGSLPPPDDKN 239
            SG P P   P R H+ ++ S     + N
Sbjct: 1854 SGSPEPPPPPPRNHDQNNSSFNDSKESN 1881


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 153 SSGRPAPKMIPRRKHNASSGSLPP 224
           SSG P P+  P +   A     PP
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPP 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,641
Number of Sequences: 438
Number of extensions: 4182
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)