Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e14
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739 168 3e-42
11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130... 50 2e-06
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 46 2e-05
02_05_0387 - 28535947-28536130,28538615-28538788,28538824-285390... 40 0.001
08_01_0966 + 9751198-9751530,9752182-9752337,9753145-9753240,975... 36 0.028
03_01_0541 + 4064491-4064715,4065018-4065070,4065190-4065226,406... 33 0.15
03_01_0362 - 2825880-2826563 33 0.15
04_04_0166 - 23250473-23250746,23251349-23252025 33 0.20
05_03_0038 + 7612866-7613132,7615691-7616608 30 1.4
10_08_0982 - 22025279-22027277,22030256-22030488,22031205-220313... 30 1.8
01_06_0754 + 31721356-31721783,31721914-31722004,31722276-317223... 29 2.4
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 29 4.2
03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992 28 7.4
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 27 9.7
>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
Length = 179
Score = 168 bits (409), Expect = 3e-42
Identities = 81/156 (51%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Frame = +1
Query: 130 KIELGDVTPHNIKQLKKLNTVVFPVSYNDKFYKDVLEAGELAKLAYYNDIVVGAVCCRID 309
+ L V N+ QLKKLNT +FPV YN+K+Y D + + E +KLAYY+DI VGA+ CR++
Sbjct: 23 RTSLDGVRDKNVMQLKKLNTALFPVRYNEKYYHDTIASKEFSKLAYYSDICVGAIACRLE 82
Query: 310 TSENSR-RLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDF 486
E +YIMTLG L PYR LGIGS ++ HV++ ++ N I+LHVQ NN+ AI F
Sbjct: 83 KKEGGAVCVYIMTLGVLAPYRSLGIGSKLLNHVIDLCEKQ-NIPEIYLHVQTNNDDAIAF 141
Query: 487 YKKFGFEIVETKERYYKRIEPADAHVLQKTIRLPST 594
YKKFGFEI +T E+YYK I P D +VL K I +T
Sbjct: 142 YKKFGFEITKTIEKYYKNITPPDCYVLTKFIGQAAT 177
>11_05_0016 -
18410889-18411104,18411326-18411381,18412883-18413009,
18413113-18413307
Length = 197
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +1
Query: 283 VGAVCCRIDTSENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQV 462
VG V C++ + R YI L L PYR GI + +V + + + G + + L +V
Sbjct: 75 VGTVVCKMGEHRGAFRGYIAMLVVLKPYRGRGIATELVTRSIRVMMESG-CEEVTLEAEV 133
Query: 463 NNEGAIDFYKKFGFEIVETKERYY 534
N+GA+ Y + GF + RYY
Sbjct: 134 TNKGALALYGRLGFIRAKRLYRYY 157
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Frame = +1
Query: 151 TPHNIKQLKKLNTVVFPVSYNDKFYK-DVLEAGELAKLAY-YNDIVVGAVCCRI--DTSE 318
T ++ ++ N + P +Y K+Y +L +L +A Y +VG V ++ D SE
Sbjct: 8 TIDDLLAMQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEEDPSE 67
Query: 319 NSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDFY-KK 495
+I +L L +R+LG+ + ++ + Q + + LHV+ +N A + Y
Sbjct: 68 PCHG-HITSLAVLRSHRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRSNRAAFNLYTST 126
Query: 496 FGFEIVETKERYYKRIEPADAHVLQKTIRLP 588
G++I + + +YY + DA+ ++K +R P
Sbjct: 127 LGYQIHDVEAKYY--ADGEDAYDMRKPLRQP 155
>02_05_0387 -
28535947-28536130,28538615-28538788,28538824-28539023,
28539090-28539234,28539403-28539509
Length = 269
Score = 40.3 bits (90), Expect = 0.001
Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 42/193 (21%)
Frame = +1
Query: 148 VTPHNIKQLKKLNTVVFPVSYNDKFYKDVLE--------AGELAKLAYYNDIVVGAVCCR 303
+ P +++ L+ ++ +FP+ Y +F+ +V+ A + ++ D ++G V R
Sbjct: 17 IQPSDLEVLENIHLALFPIRYEREFFLNVVNGNGIISWGAVDTSRSDDRRDELIGFVTTR 76
Query: 304 IDTSE----------NSRR-----LYIMTLGCLYPYRRLGIGSMMVKHV---------LN 411
I ++ NS R LYI+TLG + YR LGIG ++ + +N
Sbjct: 77 IIAAQDSEIEDLFRYNSSRKDLTLLYILTLGVVESYRNLGIGCYLLVQLSFTVCDYDLIN 136
Query: 412 YVK----QDGNFDS--IFLHVQVNNEGAIDFYKKFGFEIVETKER-YYKRIEPADAHVLQ 570
K Q ++ ++LHV N+ AI FY K F++V YY R + D+++
Sbjct: 137 PHKHSRLQHPHWSERGVYLHVISYNQPAISFYNKMLFKLVRRLPHFYYIRGQHYDSYLFV 196
Query: 571 KTI---RLPSTPL 600
+ R P +PL
Sbjct: 197 YYVNGGRSPCSPL 209
>08_01_0966 +
9751198-9751530,9752182-9752337,9753145-9753240,
9753599-9753719,9754027-9754196
Length = 291
Score = 35.9 bits (79), Expect = 0.028
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 301 RIDTSENSR-RLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGA 477
R +E+S R Y+ + +R G+G +V ++ G D +++HV +NNE A
Sbjct: 193 RPGVNESSHTRAYLSNVCVAKELQRNGLGYALVDKSKKLAREWGITD-LYVHVAINNEAA 251
Query: 478 IDFYKKFGFEIVETKERYYK 537
Y K GF + E++E +K
Sbjct: 252 QKLYNKCGF-VYESEEPAWK 270
>03_01_0541 +
4064491-4064715,4065018-4065070,4065190-4065226,
4065409-4065474,4065809-4065907,4066000-4066153,
4066267-4066343,4066438-4066500
Length = 257
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 298 CRIDTSENSRRLYIMTLGCLYPY-RRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEG 474
CRI + + Y+ + C+ Y RR GI S M+ ++ + +G + +++HV +N
Sbjct: 169 CRIYQPDQPKFGYLTNV-CVAKYARRQGIASNMLLLAIDAARLNGA-EEVYIHVHKDNLP 226
Query: 475 AIDFYKKFGFEIVE 516
A Y + GF +V+
Sbjct: 227 ARRLYDQIGFRMVD 240
>03_01_0362 - 2825880-2826563
Length = 227
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 277 IVVGAVCC--RIDTSENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFL 450
+ G V C T + LY+ + P+RR G+G MM+ V + G +
Sbjct: 118 VTAGFVICFPNYSTFLSKPGLYVEDIFVRAPWRRRGLGRMMLSAVAGKAAELG-MGRVEW 176
Query: 451 HVQVNNEGAIDFYKKFGFEIV 513
V N+ AIDFY+ G E++
Sbjct: 177 CVLDWNKNAIDFYEGMGAEVL 197
>04_04_0166 - 23250473-23250746,23251349-23252025
Length = 316
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 334 YIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDFYKKFGFEIV 513
YI + RR GIG ++K + + + ++LH ++ ++ + Y+K G+ IV
Sbjct: 214 YICNMTVKTSLRRRGIGKQLLKACEDLIIKMDAKRHVYLHCRIIDQVPFNMYRKAGYNIV 273
Query: 514 ET 519
+T
Sbjct: 274 QT 275
>05_03_0038 + 7612866-7613132,7615691-7616608
Length = 394
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 274 HYNKLILRVHQPPEHLCKTYHYMTLEIQLCSI-FSTALYYAASRRRVL 134
H ++ +L PP H YH++ EI++ SI + L YA R++
Sbjct: 202 HLSRTMLLRFDPPPHRFHVYHFVWEEIRMASIQYKKGLVYAPHIMRMI 249
>10_08_0982 -
22025279-22027277,22030256-22030488,22031205-22031344,
22032783-22032957
Length = 848
Score = 29.9 bits (64), Expect = 1.8
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +1
Query: 154 PHNIKQLKKLNTVVFPVSYND-KFYKDVLEAGELAKLAYYNDIVVGAVCCRIDTSENSRR 330
P +K++K L V F V N + +DV E L ++ Y D I +N
Sbjct: 593 PLELKKMKMLREVGFSVLGNHLQVAQDVGELDHLQEMVVYVD--------DITFDDNVLT 644
Query: 331 LYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAID 483
+ +L LY RRL IG + LN++ Q + + H+ + G ID
Sbjct: 645 EFANSLSKLYSLRRLIIGDVGYGKTLNFLDQLPSPPQLLRHLMI--AGGID 693
>01_06_0754 +
31721356-31721783,31721914-31722004,31722276-31722365,
31722952-31723078,31723237-31723280,31723749-31724009
Length = 346
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 565 RHERLLVLFSYSNVLLFQQFQSRISCKSLLHLHYS 461
R + + Y L QFQ +++ +++ HLHYS
Sbjct: 288 RRRKTCAAYRYRGTPLLLQFQGQVAQRAIQHLHYS 322
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -3
Query: 310 CLSCSTRLPPLCHYNKLILRV--HQPPEHLCKTYHYMTLEIQLCSIF 176
CL S L + H LIL H PE LC YH L + S F
Sbjct: 639 CLRHSPDLNHMIHLRCLILPYTNHPLPESLCSLYHLQMLSVHPHSCF 685
>03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992
Length = 399
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +1
Query: 322 SRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAID-FYKKF 498
S+ YI+ L YRR G+G +V + + +Q G + ++ + +NE ++ F +
Sbjct: 102 SKVAYILGLRVSPRYRRKGVGKKLVGRMEEWFRQSG-AEYSYMATEQDNEASVRLFTGRC 160
Query: 499 GFEIVETKERYYKRIEPADAHVLQ 570
G+ T + P H LQ
Sbjct: 161 GYSKFRTPS---VLVHPVFGHALQ 181
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 130 KIELGDVTPHNIKQLKKLNTVVFPVSYNDKFYKDVLEAGELAKLAYYN 273
+ E+ D + H + +KK+N FP +D F+ D++ +++KL + N
Sbjct: 464 RAEISDESDHKVLAVKKINVSAFPSKPSD-FFIDLV--AKISKLNHPN 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,260
Number of Sequences: 37544
Number of extensions: 344413
Number of successful extensions: 783
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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