Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e14
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical pr...   171   3e-43
U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical pr...    90   1e-18
AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical...    57   1e-08
Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical pr...    52   3e-07
Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical pr...    52   3e-07
AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical...    48   8e-06
AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical ...    42   5e-04
AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine re...    36   0.025
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    31   0.53 
Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical
           protein F40F4.7 protein.
          Length = 245

 Score =  171 bits (417), Expect = 3e-43
 Identities = 79/150 (52%), Positives = 106/150 (70%)
 Frame = +1

Query: 133 IELGDVTPHNIKQLKKLNTVVFPVSYNDKFYKDVLEAGELAKLAYYNDIVVGAVCCRIDT 312
           + LG++TPHNI QLKKLN  VFP++YNDKFY +    GEL +LAYYND+VVGAVCCRID 
Sbjct: 96  VHLGEITPHNILQLKKLNEDVFPIAYNDKFYVEARYCGELGRLAYYNDVVVGAVCCRIDD 155

Query: 313 SENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDFYK 492
             + + LY+MTLG L  YR++GIG++++ + L    +     +++LHVQVNN+ A+ FY+
Sbjct: 156 ISDEKSLYLMTLGTLAAYRQIGIGTILIDYALKLCNKMEEIKTMYLHVQVNNKNAVQFYE 215

Query: 493 KFGFEIVETKERYYKRIEPADAHVLQKTIR 582
           K GF      E YY RI P DA++L K IR
Sbjct: 216 KHGFTNDGIIEDYY-RISPRDAYLLIKRIR 244


>U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical
           protein F54E7.9 protein.
          Length = 167

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
 Frame = +1

Query: 130 KIELGDVTPHNIKQLKKLNTVVFPVSYNDKFYKDVLEAGELAKLAYYNDIVVGAVCCRID 309
           ++ L  VT  NIK ++ L + +FPVSY+DKFY++ +   EL  +   N   +  V  + +
Sbjct: 19  ELRLQRVTAENIKTVRILVSSIFPVSYSDKFYQECMN-NELTGVVIRNGEAIAIVAVKPE 77

Query: 310 TSENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSI---FLHVQVNNEGAI 480
             E  R LYI + G    +R  G+GS +    +++V + G    +    LHVQ +N+ AI
Sbjct: 78  NFETGRVLYIRSFGVHPRHREAGLGSFL----MDFVDEKGKLLKLPHAMLHVQTSNKTAI 133

Query: 481 DFYKKFGFEIVETKERYYKRIEPADAHVLQK 573
           +FYK  GF +     +YY+R  P DA +++K
Sbjct: 134 EFYKNRGFNVDCLVPQYYQRCSPPDAFIMRK 164


>AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical
           protein K07H8.3 protein.
          Length = 182

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
 Frame = +1

Query: 160 NIKQLKKLNTVVFPVSYNDKFY-KDVLEAGELAKLAY-YNDIVVGAVCCRIDTSENSR-R 330
           ++  ++  N +  P +Y  K+Y    L   +L+ +A  +   VVG V  +++        
Sbjct: 10  DLMSMQNANLMCLPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKMEEDPGEEPH 69

Query: 331 LYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDFYKK-FGFE 507
            +I +L     YRRLG+ + M+      + +  N   + LHV+V+N  A++ YK    FE
Sbjct: 70  GHITSLAVKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVSNRAALNLYKNTLKFE 129

Query: 508 IVETKERYYKRIEPADAHVLQKTI 579
           IV+T+ +YY   +  DA+ +++ +
Sbjct: 130 IVDTEPKYY--ADGEDAYAMRRDL 151


>Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical
           protein F30F8.10b protein.
          Length = 215

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
 Frame = +1

Query: 196 FPVSYNDKFYKDVLEAGELAKLAYYNDIVVGAVC--------CRIDT-----SENSRRLY 336
           FP+ Y D +Y +V+  G L+   +  + +   V         C ++      S N+   Y
Sbjct: 40  FPIQYPDCWYDEVVSGGLLSTGLFDGEQLAAMVVSETKFLYDCNLEDQGILPSSNAHVAY 99

Query: 337 IMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFD-SIFLHVQVNNEGAIDFYKKFGFEIV 513
           I+++     +RRLG+ + ++ ++++ +     +  ++FLHV   N  A+ FYK  GFE  
Sbjct: 100 ILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFYKMHGFEFH 159

Query: 514 ETKERYYK 537
            +   YY+
Sbjct: 160 ASLPEYYR 167


>Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical
           protein F30F8.10a protein.
          Length = 242

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
 Frame = +1

Query: 196 FPVSYNDKFYKDVLEAGELAKLAYYNDIVVGAVC--------CRIDT-----SENSRRLY 336
           FP+ Y D +Y +V+  G L+   +  + +   V         C ++      S N+   Y
Sbjct: 67  FPIQYPDCWYDEVVSGGLLSTGLFDGEQLAAMVVSETKFLYDCNLEDQGILPSSNAHVAY 126

Query: 337 IMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFD-SIFLHVQVNNEGAIDFYKKFGFEIV 513
           I+++     +RRLG+ + ++ ++++ +     +  ++FLHV   N  A+ FYK  GFE  
Sbjct: 127 ILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFYKMHGFEFH 186

Query: 514 ETKERYYK 537
            +   YY+
Sbjct: 187 ASLPEYYR 194


>AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical
           protein B0238.10 protein.
          Length = 278

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
 Frame = +1

Query: 247 ELAKLAY--YNDIVVGAVCCRIDTSENSR-RLYIMTLGCLYPYRRLGIGSMMVKHVLNYV 417
           E   LAY   N+  +GAV C+++     R + Y+  L      RRLGIG+ +V+  L+ +
Sbjct: 135 EYCFLAYDQTNNTYIGAVLCKLELDMYGRCKGYLAMLAVDESCRRLGIGTRLVRRALDAM 194

Query: 418 KQDGNFDSIFLHVQVNNEGAIDFYKKFGFEIVETKERYY 534
           +  G  D I L  +V+N+ A   Y   GF   +   +YY
Sbjct: 195 QSKG-CDEIVLETEVSNKNAQRLYSNLGFIRQKRLLKYY 232


>AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.3 protein.
          Length = 173

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
 Frame = +1

Query: 154 PHNIKQLKKLNTVVFPVS---YNDKFYKD-VLEAGELAKLAYY-NDIVVGAVCCRIDTSE 318
           P ++  + K N V   ++   Y  +FY   ++   E  ++A + N  ++  V  +I+  +
Sbjct: 6   PFDVMDMFKFNNVNLDINTETYGFQFYLHYMMNYPEYYQVAEHPNGEIMAYVMGKIEGRD 65

Query: 319 NSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDFYKKF 498
            +   ++  L     +RRLG+ + M++  L    +      + L V+V+N+ AI+ YKK 
Sbjct: 66  TNWHGHVTALSVAPNFRRLGLAAYMMEF-LERTSEARRAYFVDLFVRVSNKIAIELYKKL 124

Query: 499 GFEIVETKERYYKRIEPADAHVLQKTI 579
           G+ +      YY      DA  ++K++
Sbjct: 125 GYVVYRQIIGYYTGDRDEDAFDMRKSL 151


>AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein122 protein.
          Length = 372

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 292 VCCRIDTSENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQ 423
           VC  + +   S  +++ T GC+YP  R+  G+ ++   LN  KQ
Sbjct: 328 VCLFMSSQYRSTTIHVFTCGCIYPKTRMSSGTRIISSPLNNFKQ 371


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 472 GAIDFYKK-FGFEIVETKERYYKRIEPADAHVLQKTIRLPS 591
           G +D+Y K F F+ ++   RY K + PA++HV+      P+
Sbjct: 141 GGLDYYVKLFDFQKMDMSMRYDKELLPAESHVINSLAFSPN 181


>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 255 CEFTSLQNIFVKLIII*HWKYNCVQFFQLLY 163
           C    + +  VK++II +W Y C  FF L+Y
Sbjct: 247 CSILLMDHFQVKMMII-YWSYVCFNFFALVY 276


>Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical
           protein C31A11.3 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 260 NFASSPASRT--SL*NLSLYDTGNTTVFNFFNCFILCGVTS 144
           N+ S   S+T      ++L+DT   TVFN F  FIL  V S
Sbjct: 199 NYFSKQTSKTISRATRIALFDTVFITVFNTFPAFILVKVAS 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,796
Number of Sequences: 27780
Number of extensions: 324215
Number of successful extensions: 790
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)