Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e12
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   5.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.7  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 535 LSARRLQWLA--SFFSTKFYSNCPFNFSK 455
           ++A    WL+  SFF   F+  CP  F +
Sbjct: 405 VNAGMWMWLSCSSFFQQFFHCYCPIKFGR 433


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 118 SYNSSQETTKSFCFKN*TSCKCSA 189
           ++ SSQ+T+ SF  K  +  KC +
Sbjct: 392 THTSSQQTSDSFLSKRNSEKKCGS 415


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -3

Query: 561 SPPREFRYFCPPGGCSGWPLSFPRSFIPIALSIFPRTMLFGMPR 430
           +PP    Y  PP  C  W   +   ++  A +++ +    G PR
Sbjct: 20  TPPHNPAYSPPPSYCDPWYNPYYYQYLQNA-ALYHKLQFRGPPR 62


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/37 (18%), Positives = 16/37 (43%)
 Frame = -2

Query: 523  RLQWLASFFSTKFYSNCPFNFSKNNVIWNATTSFIII 413
            +L W+A F      +     + ++ V W   T  +++
Sbjct: 913  QLSWVAPFDGNSPITRYMIEYKQSKVSWEGNTERVLV 949


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,695
Number of Sequences: 336
Number of extensions: 3555
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)