Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e12
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         48   1e-05
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     31   1.3  
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)                     30   2.2  
SB_40158| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      29   3.8  
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        28   6.7  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = +2

Query: 386 KICEKPQIVNDYEAGRGIPNNIVLGKIERAI 478
           K+ EKP ++ +YE G+ IPNN VLGKIERAI
Sbjct: 1   KVNEKPHVIMEYEQGKAIPNNQVLGKIERAI 31


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 104  SDWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDR 283
            S++D  T  +K  PKA+ L+   ++ +A R+G+PV     Y + T K   +       D+
Sbjct: 938  SNYDHNTA-KKNTPKATVLEESASLTSANRRGLPVSL---YSSNTGKTPDSCTELKGSDK 993

Query: 284  ETEE 295
              EE
Sbjct: 994  HNEE 997


>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
          Length = 893

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 197 GIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQG 346
           G PV   Q+   G + +++T +NT K   +T++    ++P   G +   G
Sbjct: 439 GPPVSQVQRLAPGNSTRNMTKENTGKETSKTQQPEQPRVPKSSGLITTAG 488


>SB_40158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/105 (20%), Positives = 45/105 (42%)
 Frame = +2

Query: 143 PKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELRHEKIPLD 322
           P+ S  +   A +A        D + +Y     + HVT      L+RE E+++  +  ++
Sbjct: 12  PRISGAEDLMAADAIYHFDCMTDLRNRY-----RSHVTRNRVENLEREDEKIKESQAYVE 66

Query: 323 LGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVL 457
           L + I     A G S  +++       + V+++     +P+ + L
Sbjct: 67  LTEYIKDSATADGKSLDEISAIYGSFLRNVSEFSRLDALPSVVYL 111


>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 359 GMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIER 472
           G +Q D    +  KP++ N     RGIP NI++  ++R
Sbjct: 712 GATQVDYHCHVTPKPEVSNRNRGFRGIPLNIIILGLDR 749


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +2

Query: 128 LRKKPPKASALKTEQAVNAARRQGIP-VDTQQKYGAGTNKQHVTTKNTAKLDRETEELRH 304
           L K+  K   LK ++    A+ +     D + K+     ++ V   N   L R  EEL H
Sbjct: 231 LMKRENKELELKVQELEKFAKEKAAKSFDLECKFAMLDKEKKVGGGNNVALQRRCEELEH 290

Query: 305 EKIPLDLGKLIMQGRQAKGMSQKDL 379
           E   L L +  M+  +A  +  K L
Sbjct: 291 EINALRLEEAEMERLKAVEVDYKKL 315


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 137 KPPKASALKTEQAVNAARRQGIPVD-TQQKYGAGTNKQHVTTKNTAKLDRETEELRHE 307
           K P  +++  E   NA +R+ +  D TQ + G GT K H+   +  K   + +E +HE
Sbjct: 97  KNPNTTSIDGEH--NAEKREDVENDNTQGESGEGTRK-HIDNGDERKDTNDDDETKHE 151


>SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 311 IPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVL 457
           + LD   + ++ +   G +Q DL   +  KP++++  +   GIP NI++
Sbjct: 210 VKLDEDFIQVETQLKSGGTQTDLHAHVSPKPEVLSRPKKDAGIPLNIII 258


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 561 SPPREFRYFCPPGGCSGWPLSFPRS 487
           +P R FR+ CPP G S  P  F R+
Sbjct: 559 TPFRRFRFNCPPFGISSAPEVFQRT 583


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,700,312
Number of Sequences: 59808
Number of extensions: 395669
Number of successful extensions: 1064
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)