Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e12
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95619-1|CAB09112.1|  156|Caenorhabditis elegans Hypothetical pr...   148   3e-36
AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z69718-2|CAA93536.1|  139|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z95619-1|CAB09112.1|  156|Caenorhabditis elegans Hypothetical
           protein H21P03.1 protein.
          Length = 156

 Score =  148 bits (359), Expect = 3e-36
 Identities = 64/133 (48%), Positives = 98/133 (73%)
 Frame = +2

Query: 104 SDWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDR 283
           +D ++VT++ K+ P    LK+   +NAA+R G+ + T++K  +G N+QH   KNT +LD 
Sbjct: 11  TDPNSVTMITKRGPVNKTLKSAAQLNAAQRAGVDISTEKKTMSGGNRQHSANKNTLRLDE 70

Query: 284 ETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGK 463
           ETEEL H+K+ L LGK++ Q R  KG +QKDL+T+I EKPQ+V +YE+G+ +PN  ++ K
Sbjct: 71  ETEELHHQKVALSLGKVMQQARATKGWTQKDLSTQINEKPQVVGEYESGKAVPNQQIMAK 130

Query: 464 IERAIGIKLRGKE 502
           +ERA+G+KLRGK+
Sbjct: 131 MERALGVKLRGKD 143


>AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical
           protein K08D9.6 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = -3

Query: 234 PAPYFCCVSTGIPCRRAAFTACSVFKAEAFGGFLRRIVTVSQSDMFNVDHWYDKTK 67
           P P   C+S      +       V  A  FGG L   +T      FN+   Y+K K
Sbjct: 185 PKPVIICISPQFVAEQWQIFMMQVHVAHRFGGHLHIYLTSIVESFFNLMREYEKRK 240


>Z69718-2|CAA93536.1|  139|Caenorhabditis elegans Hypothetical
           protein W06D11.3 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 236 TNKQHVTTKNTAKLDRETEELRHEKIPLDLG 328
           ++KQH+ T+N   +D E E+   EKI  + G
Sbjct: 71  SSKQHMVTENIETVDAENEQQDGEKIASNTG 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,748,416
Number of Sequences: 27780
Number of extensions: 319114
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)