Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e09
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 116 4e-27
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 104 2e-23
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 54 2e-08
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 2.2
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 3.0
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 27 3.9
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 25 9.0
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 9.0
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 9.0
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 116 bits (279), Expect = 4e-27
Identities = 52/75 (69%), Positives = 67/75 (89%)
Frame = +2
Query: 95 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 274
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 275 YGLVVAVLIAGALQE 319
YGLVV+VLI+G L++
Sbjct: 67 YGLVVSVLISGNLKQ 81
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 104 bits (249), Expect = 2e-23
Identities = 46/82 (56%), Positives = 62/82 (75%)
Frame = +2
Query: 95 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 274
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 275 YGLVVAVLIAGALQEPANYPLY 340
YGLV++VLIAG + +Y L+
Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLF 88
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 54.4 bits (125), Expect = 2e-08
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +2
Query: 113 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 292
+G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 293 VLIAGALQE--PANY 331
++ + + + PA +
Sbjct: 105 IVFSAKINDINPAGF 119
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +2
Query: 98 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 277
+YGPF+ A+ FS Y +G G + S+ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 278 GLVVAVLIAGAL 313
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +2
Query: 74 NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 238
+K+A ++P I F+G ++G + F+ + + ++ G S LI+ S
Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483
Query: 239 IIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLY 340
+ P+V++ IIA + + +++ L + + Y +Y
Sbjct: 1484 VAPLVLSAIIAFFFFCLGIMLRPILGDRSKTYGVY 1518
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 495 ILLCVDKYISNINLTQISIFINY 427
+L+C D + I++ Q+S+ INY
Sbjct: 313 VLICTDIWARGIDVQQVSLVINY 335
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 239 IIPVVMAGIIAIYGLVVAVLIAGAL 313
II +AG+IA + +++ IAG +
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVI 217
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 53 TGPKNCDDYLHTL 15
TGP N DDY+H +
Sbjct: 369 TGPSNTDDYIHRI 381
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 531 FNVNVKENESLNILLCVDKYISN 463
+ NV+++ N+LLC ++SN
Sbjct: 563 YRCNVRDSSIYNVLLCCTNHVSN 585
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,432
Number of Sequences: 5004
Number of extensions: 64564
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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