Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e09
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 113 2e-25
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 112 3e-25
05_01_0043 - 295041-295173,296252-296537,296616-296697 111 4e-25
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 110 1e-24
01_07_0267 + 42410174-42410252,42410679-42411097 108 6e-24
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 50 2e-06
09_01_0019 + 403078-404211 30 2.3
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 30 2.3
10_08_0401 + 17629912-17630376 29 4.1
08_02_0341 + 15994817-15994852,15995371-15995439,15995667-159959... 29 4.1
04_03_0301 + 14094370-14094584,14096694-14096727,14098084-140980... 28 9.4
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 113 bits (271), Expect = 2e-25
Identities = 51/78 (65%), Positives = 65/78 (83%)
Frame = +2
Query: 107 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 286
PFFG +GAASA+IFS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 12 PFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 71
Query: 287 VAVLIAGALQEPANYPLY 340
+AV+I+ + P P Y
Sbjct: 72 IAVIISTGI-NPKAKPYY 88
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 101 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM--SVMRPELIMKSIIPVVMAGIIAI 274
Y F G +S + G A G A G A + + +P+L + I+ ++ A +A+
Sbjct: 87 YYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALAL 146
Query: 275 YGLVVAVLIA 304
YGL+V ++++
Sbjct: 147 YGLIVGIILS 156
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 112 bits (270), Expect = 3e-25
Identities = 50/78 (64%), Positives = 65/78 (83%)
Frame = +2
Query: 107 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 286
PFFG +GAASA++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 12 PFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 71
Query: 287 VAVLIAGALQEPANYPLY 340
+AV+I+ + P P Y
Sbjct: 72 IAVIISTGI-NPKAKPYY 88
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 101 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM--SVMRPELIMKSIIPVVMAGIIAI 274
Y F G +S + G A G A G A + + +P+L + I+ ++ A +A+
Sbjct: 87 YYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALAL 146
Query: 275 YGLVVAVLIA 304
YGL+V ++++
Sbjct: 147 YGLIVGIILS 156
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 111 bits (268), Expect = 4e-25
Identities = 48/73 (65%), Positives = 63/73 (86%)
Frame = +2
Query: 107 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 286
PFFG +GAASA++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 13 PFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 72
Query: 287 VAVLIAGALQEPA 325
+AV+I+ + A
Sbjct: 73 IAVIISTGINPKA 85
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 92 NPIYGPFF---GVMGAASAIIFSALGAAYGTAKSGTGIAAM--SVMRPELIMKSIIPVVM 256
NP P+F G +S + G A G A G A + + +P+L + I+ ++
Sbjct: 82 NPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIF 141
Query: 257 AGIIAIYGLVVAVLIA 304
A +A+YGL+V ++++
Sbjct: 142 AEALALYGLIVGIILS 157
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 110 bits (265), Expect = 1e-24
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +2
Query: 107 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 286
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 14 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 73
Query: 287 VAVLIAGALQEPA 325
+AV+I+ + A
Sbjct: 74 IAVIISTGINPKA 86
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +2
Query: 206 SVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 304
+ +P+L + I+ ++ A +A+YGL+V ++++
Sbjct: 158 NAQQPKLFVGMILILIFAEALALYGLIVGIILS 190
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 108 bits (259), Expect = 6e-24
Identities = 51/91 (56%), Positives = 66/91 (72%)
Frame = +2
Query: 89 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 268
N + PF G +GAA A++FS +GAAYGTA+SG G+A M VMRPEL+MKSI+PVVMAG++
Sbjct: 6 NGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVMAGVL 65
Query: 269 AIYGLVVAVLIAGALQEPANYPLYKLVSGSV 361
IYGL++AV+I + P P Y GSV
Sbjct: 66 GIYGLIIAVIITTGI-NPTAMPYYHF-DGSV 94
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +2
Query: 125 GAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 304
G A+ + A G A G G+ A + +P+L + I+ ++ A + +YGL+V ++++
Sbjct: 99 GLATGLCALAAGLAIGVV-GDAGVRA-NAQQPKLFVGMILILIFAEALGLYGLIVGIILS 156
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/68 (32%), Positives = 41/68 (60%)
Frame = +2
Query: 113 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 292
F +G A +I S LGAA+G +G+ + ++ P + K++I V+ +AIYG++VA
Sbjct: 20 FSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVA 79
Query: 293 VLIAGALQ 316
+++ L+
Sbjct: 80 IILQTKLE 87
>09_01_0019 + 403078-404211
Length = 377
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -3
Query: 286 DQTVDGNNTRHDDRNDRLHDQLRPHHRHXXXXXXXXXXXXXXXXGAEDDSRRRPHNSKEG 107
D T D + + +DR R H + + HHR + SRRR H E
Sbjct: 293 DDTSDEDESGGEDRRRRRHRKRQHHHRKGASDGDSGSGASDSADDRKRSSRRRRHRKSES 352
Query: 106 S 104
S
Sbjct: 353 S 353
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 199 RHVGDEA*ADHEVDHSCRHGGYYCHLRSGRGCPDCWCPP 315
R V + AD D CR G SG + +CPP
Sbjct: 16 REVSEALTADSSADEECRRGSSSSSASSGDASSESYCPP 54
>10_08_0401 + 17629912-17630376
Length = 154
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 119 VMGAASAIIFSALGAAYGTAKSGTGIAA 202
V GAA+ F+AL AY A+ G+AA
Sbjct: 111 VAGAAAVAAFAALAVAYAVARRRVGVAA 138
>08_02_0341 +
15994817-15994852,15995371-15995439,15995667-15995973,
15996231-15996253
Length = 144
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 310 GTSNQDSHDQTVDGNNTRHDDRNDRL 233
G + + HD ++DG N +DD D L
Sbjct: 98 GAEDDNGHDVSIDGLNANNDDNGDEL 123
>04_03_0301 +
14094370-14094584,14096694-14096727,14098084-14098095,
14098400-14098574,14099064-14099299,14099396-14100457
Length = 577
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 337 KGVVGWLLEGTSNQDSHDQTVDGNNTRHDDR 245
KG+VG SNQ HD T D +T D++
Sbjct: 202 KGIVG-TKPSASNQHQHDGTTDSRHTVEDEK 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,240,045
Number of Sequences: 37544
Number of extensions: 418618
Number of successful extensions: 972
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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