Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e09
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 114 7e-26
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 114 7e-26
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 112 3e-25
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 112 3e-25
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 112 3e-25
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 112 3e-25
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 44 1e-04
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.17
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 33 0.30
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 33 0.30
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 32 0.39
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.68
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 4.8
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 4.8
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 4.8
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 4.8
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 8.4
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 114 bits (274), Expect = 7e-26
Identities = 52/81 (64%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Frame = +2
Query: 98 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 277
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 278 GLVVAVLIAGALQEP-ANYPL 337
GLVVAV+++G ++ ANY +
Sbjct: 80 GLVVAVIVSGKVEPAGANYTI 100
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +2
Query: 155 LGAAYGTAKSG-TGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGA 310
LGA Y +G G+ A+S +P + + I+ ++ A ++ +YG++VA LI GA
Sbjct: 118 LGAGYAIGIAGDAGVRALS-QQPRMFVGMILILIFAEVLGLYGMIVA-LILGA 168
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 114 bits (274), Expect = 7e-26
Identities = 52/81 (64%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Frame = +2
Query: 98 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 277
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 278 GLVVAVLIAGALQEP-ANYPL 337
GLVVAV+++G ++ ANY +
Sbjct: 80 GLVVAVIVSGKVEPAGANYTI 100
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +2
Query: 155 LGAAYGTAKSG-TGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGA 310
LGA Y +G G+ A+S +P + + I+ ++ A ++ +YG++VA LI GA
Sbjct: 118 LGAGYAIGIAGDAGVRALS-QQPRMFVGMILILIFAEVLGLYGMIVA-LILGA 168
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 112 bits (269), Expect = 3e-25
Identities = 56/82 (68%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +2
Query: 101 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 280
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 281 LVVAVLIAGAL-QEPANYPLYK 343
LVVA+++ G + A Y L K
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNK 94
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +2
Query: 113 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 292
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 293 VLI 301
+++
Sbjct: 156 LIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 112 bits (269), Expect = 3e-25
Identities = 56/82 (68%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +2
Query: 101 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 280
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 281 LVVAVLIAGAL-QEPANYPLYK 343
LVVA+++ G + A Y L K
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNK 94
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +2
Query: 113 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 292
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 293 VLI 301
+++
Sbjct: 156 LIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 112 bits (269), Expect = 3e-25
Identities = 56/82 (68%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +2
Query: 101 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 280
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 281 LVVAVLIAGAL-QEPANYPLYK 343
LVVA+++ G + A Y L K
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNK 94
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +2
Query: 113 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 292
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 293 VLI 301
+++
Sbjct: 156 LIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 112 bits (269), Expect = 3e-25
Identities = 56/82 (68%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +2
Query: 101 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 280
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 281 LVVAVLIAGAL-QEPANYPLYK 343
LVVA+++ G + A Y L K
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNK 94
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +2
Query: 113 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 292
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 293 VLI 301
+++
Sbjct: 156 LIL 158
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2
Query: 122 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 301
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 302 AGALQE 319
G L E
Sbjct: 114 VGKLAE 119
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2
Query: 122 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 301
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 302 AGALQE 319
G L E
Sbjct: 114 VGKLAE 119
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 235 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 318
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 343 LVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 236
++ GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 9 VIIGVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 343 LVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 236
++ GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 9 VIIGVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 215 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKLVSGSVVKYRLLYQKMV 394
RPE ++ +VMA + AIY + +++ L NY LY + V+Y+LL Q ++
Sbjct: 35 RPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLY---TTQFVEYQLLSQILI 91
Query: 395 M 397
+
Sbjct: 92 V 92
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +3
Query: 12 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 170
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 171 ELPSQE 188
++P +E
Sbjct: 343 KMPDRE 348
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 265 YCHLRSGRGCPDCWCPPGASQ 327
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 247 CRHGGYYCHLRSGRGCPDCWCPPGASQ 327
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 265 YCHLRSGRGCPDCWCPPGASQ 327
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 265 YCHLRSGRGCPDCWCPPGASQ 327
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
protein F46C3.3 protein.
Length = 2557
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 596 GTYVTYLVHFIINHIDRYDXXXXXXX*RKMKV*IYYCVWTSTYPI 462
GT+ TYL H +NH DR +++ + +C+ T+ Y +
Sbjct: 441 GTHETYLEHCNLNHTDR-SAYGKARNKERLEFGVRHCIGTTWYNV 484
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +1
Query: 268 CHLRSGR-GCPDCWCPPGASQLPP 336
C L + R GCP C CPP PP
Sbjct: 933 CQLVNDRSGCPFCSCPPVKQASPP 956
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,679,806
Number of Sequences: 27780
Number of extensions: 370057
Number of successful extensions: 897
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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