Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4e09
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   156   2e-40
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.5  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  156 bits (378), Expect = 2e-40
 Identities = 77/86 (89%), Positives = 81/86 (94%)
 Frame = +2

Query: 86  ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 265
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 266 IAIYGLVVAVLIAGALQEPANYPLYK 343
           IAIYGLVVAVLIAG L+EP  Y L+K
Sbjct: 64  IAIYGLVVAVLIAGGLEEPKGYTLFK 89


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 301 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 203
           NQ  H    D  N  ++  ND+ H   + ++RH
Sbjct: 430 NQARHSSKSDNQN--NNQHNDQAHHSSKSNNRH 460



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -3

Query: 301 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 203
           NQD++    + N  RH  ++D  ++       H
Sbjct: 419 NQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAH 451


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 487 VCGQVHIQY*LNPNKYFYQL 428
           + G+ +IQY LNPN   Y +
Sbjct: 104 IVGECNIQYALNPNTEEYYI 123


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 84  LKIIQSTDPSLELWGRRLLSSS 149
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 224 LIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKL 346
           L++ SII   + G I +    VAV +   L+ P NY L  L
Sbjct: 46  LVLGSIIVGTVIGNILV---CVAVFLVRKLRRPCNYLLVSL 83


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 251 VMAGIIAIYGLVVAVLIAGALQEPANY 331
           +++G+I   GL++ VLI G++ E   +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISEEQKF 437


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 299 IAGALQEPANYPLYKLVSGSVV 364
           IA  L EP     Y+L +G+VV
Sbjct: 398 IARILDEPIELSGYRLTAGTVV 419


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 3   VSWSECVQIVITVFGTCKYSH 65
           +SW E +QI + V    +Y H
Sbjct: 694 LSWLERIQIALDVLEGIRYLH 714


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 3   VSWSECVQIVITVFGTCKYSH 65
           +SW E +QI + V    +Y H
Sbjct: 732 LSWLERIQIALDVLEGIRYLH 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,856
Number of Sequences: 438
Number of extensions: 4338
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)