Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4e05
(407 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 9e-06
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 31 0.27
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 31 0.27
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.36
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) 29 1.5
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 2.6
SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 27 4.5
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 27 4.5
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_26402| Best HMM Match : K-box (HMM E-Value=1) 27 5.9
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_59620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 27 5.9
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6) 27 5.9
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 27 5.9
SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3) 27 5.9
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 27 7.8
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 27 7.8
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 27 7.8
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 27 7.8
SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 46.4 bits (105), Expect = 9e-06
Identities = 27/71 (38%), Positives = 32/71 (45%)
Frame = -2
Query: 403 SPAGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRP 224
SPA H R R+ SR R +R P R +R P P S R RS +PR R+ SR
Sbjct: 215 SPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRS 274
Query: 223 VWSRRSPHHFH 191
RR H
Sbjct: 275 PTHRRHRSRSH 285
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 31.5 bits (68), Expect = 0.27
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 404 QPRRSPL-RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAER 279
Q R+PL R +SR H+DH PR S HS D ER
Sbjct: 197 QEERTPLKRRSRSRSLRHEDHDDA-TPRRSRSHSLRHEDEEER 238
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 31.5 bits (68), Expect = 0.27
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 388 PSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRN-KPSR 227
P GR ++ SR T R+ T+ N R P P S R S +PR R+ PSR
Sbjct: 534 PVGRTKSPSRSY---TSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -2
Query: 403 SPAGHPSGRCRAVS--RDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPS 230
+P G R+ + R RT+ R P R R P P S R RS +P ++ P
Sbjct: 533 APVGRTKSPSRSYTSPRQRRTSPNNRSPPPRR--RSPSPRRPSPSPRRRSTSPSRKSPPP 590
Query: 229 RPVWSRRSPHH 197
R V + H
Sbjct: 591 RRVHRHQDVVH 601
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 31.1 bits (67), Expect = 0.36
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -2
Query: 364 SRDIRTTTEARRPGTARNTRRPKPTELSACCR----ERSETPRHRNKPSRPVWSRRSPHH 197
+RD R T R P ++ R P+P++ R +R P + + RP +R P H
Sbjct: 191 NRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRH 250
>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.9 bits (64), Expect = 0.84
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +1
Query: 166 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPL 342
++ +S+Y ++++ + ++++Y + P S +A SD FSLC+ GPL
Sbjct: 137 NTRLSEYLESRDCEAMDVR-LQRLYEHELVMYRLPESSATATPLSDLFDFSLCMCYGPL 194
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 405 AAPPVTPPGGAEP*AGTSGPPQRP 334
A PP PPGG+ P G PP P
Sbjct: 952 APPPPPPPGGSAPPPGGGAPPLPP 975
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 206 TPSRPNR-SRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAP 379
TPS P+ S P T + P+ + TPS APG G P P+ SAP
Sbjct: 466 TPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAP 524
>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
Length = 461
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -2
Query: 370 AVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 200
A+ + T RP + R R P S R +T PSRP + R PH
Sbjct: 4 ALHNTLTRTRVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPH 60
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 404 QPRRSPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAER 279
Q RRSP+R +SR+ + R + S H SE+ R R
Sbjct: 817 QRRRSPMRRRRSRDASPRRRRRSASGSDSSPHRRSESPRDRR 858
>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 364 SRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSP 203
+RD R T R P ++ R P+P++ ++R P + + RP +R P
Sbjct: 151 NRDTRDTINNRHPRPSQQQRYPRPSQ-----QQRYPRPSQQQRHPRPSQQQRHP 199
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -2
Query: 403 SPAGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETP 251
+P S RC+ ++ ++ ++PG+A +PK + S R+RS +P
Sbjct: 1886 TPGFSQSRRCKTTAKALKKAKGKQKPGSATKKTKPK-QDSSKKKRKRSPSP 1935
>SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 311 VSRCAWAPGLCGGPDVPAHGS 373
++R W+ LCGGPD+ GS
Sbjct: 108 ITRSWWSSRLCGGPDINDDGS 128
>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 347 HHRGPAPRHSEKHSASEADRAER 279
H GP+ RHS H +E++ A+R
Sbjct: 123 HKEGPSSRHSNVHELNESELAKR 145
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.5 bits (58), Expect = 4.5
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -2
Query: 403 SPAGHPSGRCRAVSRDIRTTTEARRPGTARNT--RRPKPTELSACCRERSETPRHRNKPS 230
S H R + SR R+ +R P R + R P+ S+ CR R R R+ S
Sbjct: 271 SSRSHRKHRSHSRSRSPRSK-RSRSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKS 329
Query: 229 RPVWSRRSPH 200
R RSP+
Sbjct: 330 RLRSRSRSPY 339
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 392 SPLRAVQSREQGHQDHHRGPAPRHSEKHSASEA 294
+PL +Q E+ +G A R S HSA+E+
Sbjct: 1965 TPLSVIQEEEEDEVTEPQGVASRSSRTHSAAES 1997
>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1792
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 392 SPLRAVQSREQGHQDHHRGPAPRHSEKH 309
+P++ + R +G + HHR HS+KH
Sbjct: 759 APMQHLGDRREGKRRHHRRHHHSHSQKH 786
>SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 403 SPAGHPSGRCRAVSRDIRTTTEARRPGTARN 311
S +G+P+GR R+V+R IR T+ G N
Sbjct: 599 SGSGYPAGRPRSVARAIRKKTQQTGVGIVGN 629
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -2
Query: 340 EARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSP 203
E ++P A+ T + S+ ++ + +P + PS+P WSR +P
Sbjct: 432 EEKKPLEAKTTPNVG-SGASSAFQKNTPSPSPKTTPSKPSWSRPTP 476
>SB_26402| Best HMM Match : K-box (HMM E-Value=1)
Length = 166
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = +1
Query: 124 RLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASD 303
+L + ++QQ++ S + VDS++ + EK + + SK+ L+++
Sbjct: 70 KLGETEYILQQMDSSVKQTAAIKEKDVDSLQQQLAEKDRRIEELNSKLESSKKDVLNSNQ 129
Query: 304 AECFSLCLGAGPL 342
+C GP+
Sbjct: 130 EKCLEKFKANGPV 142
>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 401 PRRSPLRAVQSREQGHQDHHRGPAPRHSE 315
P R P ++ ++ QG Q + +GP P+ S+
Sbjct: 361 PDRQPSASLPAQYQGQQPYAQGPQPQQSQ 389
>SB_59620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 331 RPGTARNTRRPKPTELSACCRERSETPRHRNKPSRP 224
RP T +T ++CC P H N SRP
Sbjct: 184 RPETVCHTTLTLVNRTNSCCHTTPNLPSHLNTQSRP 219
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -2
Query: 373 RAVSRDIRTTTEARRPGTARNTRR--PKPTELSACCRERSETPRHRNKPSRPV 221
R R + T+ P R P+PT+ R+R T R KP++P+
Sbjct: 257 RPTERPTKKPTKPLLPEVEPEEERATPRPTKAKPTTRKRMPTERPTKKPTKPL 309
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -1
Query: 344 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 240
H P+P HS+ E LP PSPE
Sbjct: 741 HSQPSPEHSQPSPEHSLPSQEHSLPSPEHSQPSPE 775
>SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)
Length = 390
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 382 GRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPR 248
G+ A + + T ARRP RRP PT + R + TPR
Sbjct: 11 GQNNATTTGVVPTPRARRPVPTPRARRPNPTTKA---RRPAPTPR 52
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 405 AAPPVTPPGGAEP*AGTSGPPQRPGAQAQRETLG 304
A+PPVT P G G P + P A + T G
Sbjct: 258 ASPPVTKPVGGPVKRGRGRPRKNPDAPSNNNTSG 291
>SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3)
Length = 331
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 387 PPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQRRPV 247
P GGA G + PPQRP T+ V + A S +RPV
Sbjct: 17 PRGGA---GGANAPPQRPKVHFWFSTIDVLLVEKLGYVAKSDNKRPV 60
>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 569
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 356 HQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 192
H HH RH KH+A A R + D+P+ + T +S +S FP
Sbjct: 167 HPSHHHVTKSRHQTKHNAKHATRVFSI------DSPNEDSQGKTANIS-DSASFP 214
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 399 PPVTPPGGAEP*AGTSGPPQRPGAQAQRETL 307
PP PPG P + SGP + P + R L
Sbjct: 3 PPPPPPGPPPPPSAPSGPVKPPPSSKNRGAL 33
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -3
Query: 402 APPVTPPGGAEP*AGTSG-----PPQRPGAQA 322
APP + P GA P +G G PP +P AQ+
Sbjct: 89 APPTSQPYGAPPTSGYPGYQQHPPPPQPSAQS 120
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 26.6 bits (56), Expect = 7.8
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = -1
Query: 398 RRS--PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 243
RRS P R G D H GP RH H +RL P RD P
Sbjct: 129 RRSGPPDRHTPPDRNGPPDRH-GPPDRHGMDHGRGRGRGRDRLSPPPHRDRGRP 181
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 405 AAPPVTPPGGAEP*AGTSGPPQRPG 331
A PP PPGGA P PP PG
Sbjct: 303 APPPPPPPGGAPP-PPPPPPPPPPG 326
>SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 311 VSRCAWAPGLCGGPDVPAH 367
V RC GL GGP+ PAH
Sbjct: 45 VERCCRFEGLPGGPEDPAH 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,241
Number of Sequences: 59808
Number of extensions: 300405
Number of successful extensions: 1092
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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