Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4d23
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006780-6|AAF60647.1| 401|Caenorhabditis elegans Hypothetical ... 210 1e-54
AC006780-7|AAF60648.1| 394|Caenorhabditis elegans Hypothetical ... 190 6e-49
CU457741-18|CAM36360.1| 365|Caenorhabditis elegans Hypothetical... 102 3e-22
Z48809-7|CAA88744.1| 367|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF358857-1|AAK52772.1| 367|Caenorhabditis elegans REF-1 protein. 30 1.4
Z70750-2|CAA94737.1| 756|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical ... 29 3.2
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 28 7.5
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 28 7.5
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 28 7.5
Z68296-1|CAA92589.2| 520|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical ... 27 9.9
AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical ... 27 9.9
>AC006780-6|AAF60647.1| 401|Caenorhabditis elegans Hypothetical
protein Y47D9A.1a protein.
Length = 401
Score = 210 bits (512), Expect = 1e-54
Identities = 95/189 (50%), Positives = 132/189 (69%)
Frame = +1
Query: 118 KAVILIGGPQKGTRFRPLSLDIPKPLFPIAGLPLIQHHIAACTKLGECKEILIIGSYTTT 297
KAV+L+GGPQKGTRFRPLSL +PKPLFPIAG+PLI+HHI +L EIL++G + +
Sbjct: 4 KAVVLVGGPQKGTRFRPLSLQLPKPLFPIAGVPLIEHHIDQLCQLSGLSEILLLGFFPSD 63
Query: 298 QMTQFVNDMQKLYRVIIRYLQEFTPLGTGGGLYHFRDQIRAGNPSAFFLLNGDVCADFPL 477
T F++ Q+ YRV I+YL+E PLGT GGL F+ QI AG+P A F++N DVC D P+
Sbjct: 64 VFTDFISRCQQTYRVSIKYLEEPNPLGTAGGLVSFKKQILAGDPDAVFVINADVCGDLPI 123
Query: 478 REMYEFHEEKPNAIVTIMGTEATRQQSVHYGCMVRNGSNAVTHYVEKPNSYVSTLINCGV 657
+M + + + ++ TEATRQQS+++G +V + V HYV+KP ++VST I+CGV
Sbjct: 124 EDMGAKLDSLSGSSMLMLTTEATRQQSINFGSVVTDSEGRVIHYVDKPTTFVSTNISCGV 183
Query: 658 YVCSLNVFQ 684
Y+ V +
Sbjct: 184 YLIKAEVIR 192
>AC006780-7|AAF60648.1| 394|Caenorhabditis elegans Hypothetical
protein Y47D9A.1b protein.
Length = 394
Score = 190 bits (464), Expect = 6e-49
Identities = 87/181 (48%), Positives = 123/181 (67%)
Frame = +1
Query: 142 PQKGTRFRPLSLDIPKPLFPIAGLPLIQHHIAACTKLGECKEILIIGSYTTTQMTQFVND 321
P+K TRFRPLSL +PKPLFPIAG+PLI+HHI +L EIL++G + + T F++
Sbjct: 5 PRKCTRFRPLSLQLPKPLFPIAGVPLIEHHIDQLCQLSGLSEILLLGFFPSDVFTDFISR 64
Query: 322 MQKLYRVIIRYLQEFTPLGTGGGLYHFRDQIRAGNPSAFFLLNGDVCADFPLREMYEFHE 501
Q+ YRV I+YL+E PLGT GGL F+ QI AG+P A F++N DVC D P+ +M +
Sbjct: 65 CQQTYRVSIKYLEEPNPLGTAGGLVSFKKQILAGDPDAVFVINADVCGDLPIEDMGAKLD 124
Query: 502 EKPNAIVTIMGTEATRQQSVHYGCMVRNGSNAVTHYVEKPNSYVSTLINCGVYVCSLNVF 681
+ + ++ TEATRQQS+++G +V + V HYV+KP ++VST I+CGVY+ V
Sbjct: 125 SLSGSSMLMLTTEATRQQSINFGSVVTDSEGRVIHYVDKPTTFVSTNISCGVYLIKAEVI 184
Query: 682 Q 684
+
Sbjct: 185 R 185
>CU457741-18|CAM36360.1| 365|Caenorhabditis elegans Hypothetical
protein C42C1.5 protein.
Length = 365
Score = 102 bits (244), Expect = 3e-22
Identities = 67/189 (35%), Positives = 96/189 (50%), Gaps = 1/189 (0%)
Frame = +1
Query: 115 LKAVILIGGPQKGTRFRPLSLDIPKPLFPIAGLPLIQHHIAACTKLGECKEILIIGSYTT 294
+KA+IL+GG GTR RPL+L PKPL A P++ H + A ++G +L + SY
Sbjct: 1 MKALILVGG--YGTRLRPLTLTQPKPLVEFANKPMMLHQMEALAEVGVDTVVLAV-SYRA 57
Query: 295 TQMTQFVNDMQKLYRVIIRYLQEFTPLGTGGGLYHFRDQIRAGNPSAFFLLNGDVCADFP 474
Q+ Q + V + + E PLGT G L R + P FF+LN DV DFP
Sbjct: 58 EQLEQEMTVHADRLGVKLIFSLEEEPLGTAGPLALARKHLEGDAP--FFVLNSDVICDFP 115
Query: 475 LREMYEFHEEKPNAIVTIMGTEATRQQSVHYGCMV-RNGSNAVTHYVEKPNSYVSTLINC 651
++M EFH+ TI T+ ++ YG +V + +VEKP YV IN
Sbjct: 116 FKQMVEFHKNHGKE-GTIAVTKV--EEPSKYGVVVFDQDKGKIDDFVEKPQEYVGNKINA 172
Query: 652 GVYVCSLNV 678
G+Y+ S +
Sbjct: 173 GLYIFSSKI 181
>Z48809-7|CAA88744.1| 367|Caenorhabditis elegans Hypothetical
protein T01E8.2 protein.
Length = 367
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 445 LNGDVCADFPLREMYEFHEEKPNAIVTIMGTEATRQQS--VHYGCMVRNGSNA 597
+N DVC DF R F E+ + + T+ G R +S +H R+ S++
Sbjct: 99 VNSDVCQDFVQRAKQFFDRERSSLLSTVSGKSKRRSESEILHSSMSYRSQSSS 151
>AF358857-1|AAK52772.1| 367|Caenorhabditis elegans REF-1 protein.
Length = 367
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 445 LNGDVCADFPLREMYEFHEEKPNAIVTIMGTEATRQQS--VHYGCMVRNGSNA 597
+N DVC DF R F E+ + + T+ G R +S +H R+ S++
Sbjct: 99 VNSDVCQDFVQRAKQFFDRERSSLLSTVSGKSKRRSESEILHSSMSYRSQSSS 151
>Z70750-2|CAA94737.1| 756|Caenorhabditis elegans Hypothetical
protein C50F4.2 protein.
Length = 756
Score = 29.9 bits (64), Expect = 1.9
Identities = 27/100 (27%), Positives = 46/100 (46%)
Frame = +1
Query: 226 HHIAACTKLGECKEILIIGSYTTTQMTQFVNDMQKLYRVIIRYLQEFTPLGTGGGLYHFR 405
H + + K+G+ + ++I+G T Q + D++++ I LQ + T G L
Sbjct: 238 HQLGSVRKMGKRQNVIILGEGVTNSKGQRI-DVRQVKEEIETRLQLEVRIATLGHLQ--- 293
Query: 406 DQIRAGNPSAFFLLNGDVCADFPLREMYEFHEEKPNAIVT 525
R G PS L G ++E+ + EEK A+VT
Sbjct: 294 ---RGGAPSFLDRLIGLRMGYEAVQEVLKGKEEKEGAVVT 330
>AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical
protein F14D2.6 protein.
Length = 998
Score = 29.1 bits (62), Expect = 3.2
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Frame = +1
Query: 136 GGPQKGTRFRPLS-LDIPKPLFPIAGL----PLIQHHIAACTKLGECKEIL----IIGSY 288
GGP G + +S KPL + L + + + + LG K +L + SY
Sbjct: 663 GGPNSGLKITNVSDFTSLKPLSQLKTLNGMLEIYETDLPNISFLGNLKSLLGTPRLEFSY 722
Query: 289 TTTQMTQFVNDMQKLYRVIIRYLQEFTPLGTGGGLY 396
T T ++D KL ++ + L+ FTPL T G+Y
Sbjct: 723 TQFNTTS-IHDNPKLKKLGLESLKNFTPLDTKLGVY 757
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 562 HYGCMVRNGSNAVTHYVEKPNSYVSTLINCGVYVCSL 672
+YG ++R GSNA++H+ + + I GV SL
Sbjct: 882 YYGLVIRFGSNALSHFARQKDGDNDKKIVNGVCTASL 918
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 562 HYGCMVRNGSNAVTHYVEKPNSYVSTLINCGVYVCSL 672
+YG ++R GSNA++H+ + + I GV SL
Sbjct: 882 YYGLVIRFGSNALSHFARQKDGDNDKKIVNGVCTASL 918
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 562 HYGCMVRNGSNAVTHYVEKPNSYVSTLINCGVYVCSL 672
+YG ++R GSNA++H+ + + I GV SL
Sbjct: 882 YYGLVIRFGSNALSHFARQKDGDNDKKIVNGVCTASL 918
>Z68296-1|CAA92589.2| 520|Caenorhabditis elegans Hypothetical
protein C46C2.2 protein.
Length = 520
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 451 GDVCADFPLREMYEFHEEKPNAIVTIMGT 537
G VC D P + E++E PN + GT
Sbjct: 49 GKVCYDVPKSKCLEYNENFPNLCANLTGT 77
>AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical
protein Y75B12B.6 protein.
Length = 896
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 412 IRAGNPSAFFLLNGDVCADFPLREMYEFHEEKPNAIVTIMGTEATRQQSVHYGCMVRN 585
+RAG P+ F L+ P YE PN + + GT T + H+ CM +N
Sbjct: 70 VRAGKPTDFELV--------PSERSYE-----PNFLTIVSGTSITNLKFTHFVCMEKN 114
>AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical
protein F55A3.1 protein.
Length = 958
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 76 LLIFIEEYIAINMLKAVILIGGPQ 147
LL+F+ +I++ L+ I+IGGPQ
Sbjct: 191 LLVFVCTFISLVWLREQIIIGGPQ 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,013,592
Number of Sequences: 27780
Number of extensions: 383913
Number of successful extensions: 832
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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