Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d23
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    28   0.075
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    28   0.075
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 28.3 bits (60), Expect = 0.075
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -2

Query: 449 FNRKNALGFPARI*SLKWYRPPPVPSGVNSCKYLIITRYSFCMSLTN*VI*VVVYEPMIK 270
           FN    +GF      + W    P+  G  +     IT     +SL+  V  V +Y P I 
Sbjct: 702 FNESKFIGFTMYTTCIIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKIY 761

Query: 269 ISLHSP 252
           I L  P
Sbjct: 762 IILFQP 767



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 601 THYVEKPNSYVSTLINCGVYVCSLNVFQVMA 693
           T  V      ++ ++  GV VC LN F ++A
Sbjct: 543 TPVVRASGRELTIILLAGVLVCYLNTFLLLA 573


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 28.3 bits (60), Expect = 0.075
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -2

Query: 449 FNRKNALGFPARI*SLKWYRPPPVPSGVNSCKYLIITRYSFCMSLTN*VI*VVVYEPMIK 270
           FN    +GF      + W    P+  G  +     IT     +SL+  V  V +Y P I 
Sbjct: 792 FNESKFIGFTMYTTCIIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKIY 851

Query: 269 ISLHSP 252
           I L  P
Sbjct: 852 IILFQP 857



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 601 THYVEKPNSYVSTLINCGVYVCSLNVFQVMA 693
           T  V      ++ ++  GV VC LN F ++A
Sbjct: 633 TPVVRASGRELTIILLAGVLVCYLNTFLLLA 663


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 449  FNRKNALGFPARI*SLKWYRPPPVPSGVNSCKYLIITRYSFCMSLTN*VI*VVVYEPMIK 270
            FN    +GF      + W    P+  G  +   L IT  S  +SL+  V    ++ P + 
Sbjct: 844  FNESKHIGFTMYTTCVIWLAFVPLYFGTGNNVALRITSMSVTISLSASVTIACLFSPKLY 903

Query: 269  ISLHSP 252
            I L  P
Sbjct: 904  IILIRP 909


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 274 IIGSYTTTQMTQFVNDMQKLYRVIIRYLQEFTPLGTG 384
           ++G Y T      +ND + +  ++IR   +F   G G
Sbjct: 72  MVGLYATRSPFLLLNDPELIKDILIRDFSKFANRGLG 108


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 191 GFGMSSDRGRNRVPFCGPP 135
           GF    D GR    FCG P
Sbjct: 511 GFAKRLDHGRKTWTFCGTP 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,449
Number of Sequences: 438
Number of extensions: 4778
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)