Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4d22
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    68   1e-12
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    60   3e-10
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    29   0.54 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.7  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   6.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.8  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    25   8.8  

>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 29/77 (37%), Positives = 44/77 (57%)
 Frame = +3

Query: 192 KEYVKWMMYWIVFALFTCTETFTDVFLSWFPFYYXVKIVLVLWLLSPATKGSSILYRKFV 371
           +E  + M YW V+   T  E+    FLSW PFY   KIV  LWLL+P T+G++ +Y  ++
Sbjct: 98  EERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNPRTQGAAFIYASYI 157

Query: 372 HPALCRREQEIDEYIAK 422
            P L   +  I+ ++ K
Sbjct: 158 SPFLSDHKAAINNFLEK 174


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 22/76 (28%), Positives = 43/76 (56%)
 Frame = +3

Query: 150 PAYASYKAVRTKNLKEYVKWMMYWIVFALFTCTETFTDVFLSWFPFYYXVKIVLVLWLLS 329
           PA+ S  A+ T N  +  +W+ Y++V +     E ++ + L + P Y+ +K + ++WL  
Sbjct: 68  PAFFSINAIETTNKADDTQWLTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFLIWLAL 127

Query: 330 PATKGSSILYRKFVHP 377
           P   G++I+YR  + P
Sbjct: 128 PKFNGATIIYRHLIRP 143


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 417 LCTHLFPVPACTKPDVQIFC--RVWRILS 337
           L  HL+P P+ T P  QI C   +WR +S
Sbjct: 382 LLQHLYPTPSFTSPVNQILCSAEIWRWVS 410


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 208  HFTYSFKFFVRTALYEAYAGYRVPNTNMT 122
            HF Y  K+F+R A   A+A   V + N++
Sbjct: 1364 HFKYDSKYFLRIATLSAWASLLVHSANVS 1392


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 384  TKPDVQIFCRVWRIL 340
            T+P +++FC VWR L
Sbjct: 1169 TRPMIRLFCLVWRCL 1183


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 407 IYFLFPPAQSRMYKFSVEYGGSFRCWR 327
           +Y     A +  Y+FS+ YGG++  W+
Sbjct: 890 LYVNHTGAGADKYRFSLNYGGTYSKWK 916


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 375 PALCRREQEIDEYIAKAKDQGYH-TVLNLGTKGVNYATTVIMQ-TAIKNFNLPS 530
           P +   E++++         G++ TV NLG KG+   TT  +Q  A++  +LPS
Sbjct: 376 PPVSHLEKDVETPSVHDSVLGFNDTVTNLGKKGLKDGTTNTLQIPAVRLPSLPS 429


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = +2

Query: 176  TDEEFEGIRKMDDVLD------SFRFVHVHGNIH*CIPIMVSVLLRXE 301
            +D+ FE  R++DDV+D      S  F+ V+G +H  + +    L + E
Sbjct: 1464 SDDIFELYRRLDDVIDLNSSLYSDDFIPVNGKLHNVVKLFSYSLCQVE 1511


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 343 PFVAGDKSHSTKTIFTS**NGNHDRNTSVNVSVHVNKAKTIQYIIHFTYSFKFFV 179
           PFV G+   S K ++      N D+N + +V VH    K+  Y   +T+ F  +V
Sbjct: 115 PFV-GNYVASDKQLYLKKIRENLDQNNASDVEVHELDWKSTPYPKDWTFDFLDYV 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,544
Number of Sequences: 5004
Number of extensions: 52494
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)