Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4d22
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 90 1e-18
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499... 86 2e-17
07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925... 84 1e-16
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735... 83 2e-16
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 77 1e-14
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 74 8e-14
11_04_0392 + 17131839-17131943,17134182-17134258,17134385-171344... 70 2e-12
06_01_0865 - 6571056-6571190,6571737-6571977,6572279-6572401,657... 67 1e-11
11_01_0354 + 2665570-2665601,2665796-2665894,2667158-2667202,266... 66 3e-11
02_05_0743 + 31425827-31425888,31426733-31426759,31426840-314269... 66 3e-11
09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416 63 1e-10
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 63 2e-10
08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316 62 3e-10
12_01_0375 + 2930807-2930838,2930936-2930999,2931127-2931333,293... 43 2e-04
04_03_0882 + 20535238-20535269,20535406-20535486,20535847-205359... 40 0.001
05_07_0052 + 27340499-27340597,27340708-27340801,27341206-273414... 31 0.56
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 27 9.1
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Frame = +3
Query: 117 RLVILVFGTLYPAYASYKAVRTKN--LKEYVKWMMYWIVFALFTCTETFTDVFLSWFPFY 290
R V+L FG YPAY YK V +++ + W YWI+ AL T E F D +SW PFY
Sbjct: 61 RCVLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWLPFY 120
Query: 291 YXVKIVLVLWLLSPATKGSSILYRKFVHPALCRREQEIDEYIAKAKDQGYHTVL 452
K++ ++L P TKG++ +Y F P + + E EID + + + + V+
Sbjct: 121 SEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVVV 174
>10_02_0078 -
4992019-4992594,4993156-4993248,4995984-4996202,
4996282-4996345,4996429-4996485,4996573-4996671,
4997296-4997327
Length = 379
Score = 86.2 bits (204), Expect = 2e-17
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Frame = +3
Query: 117 RLVILVFGTLYPAYASYKAVRTKN--LKEYVKWMMYWIVFALFTCTETFTDVFLSWFPFY 290
R+++L FG YPAY YK V +++ + W YWI+ AL T E F D +SW P Y
Sbjct: 8 RVLLLAFGYAYPAYECYKTVELNKPEIEKLIFWCQYWILVALLTVLERFGDFAISWLPLY 67
Query: 291 YXVKIVLVLWLLSPATKGSSILYRKFVHPALCRREQEID 407
K++ ++L P TKG+S +Y F P + + E +ID
Sbjct: 68 SEAKLMFFIYLWCPRTKGTSYVYETFFRPYISQYENDID 106
>07_03_0945 -
22791754-22791863,22792295-22792367,22792457-22792552,
22793268-22793331,22793957-22794008,22794525-22794622,
22795108-22795166,22795981-22796013
Length = 194
Score = 83.8 bits (198), Expect = 1e-16
Identities = 32/100 (32%), Positives = 56/100 (56%)
Frame = +3
Query: 117 RLVILVFGTLYPAYASYKAVRTKNLKEYVKWMMYWIVFALFTCTETFTDVFLSWFPFYYX 296
R G P Y++++A+ K+ KE +W++YW + F+ E F D LS PFYY
Sbjct: 28 RTASCAIGVGLPVYSTFRAIEKKDQKEKERWLLYWAAYGSFSIAEIFADQILSSVPFYYH 87
Query: 297 VKIVLVLWLLSPATKGSSILYRKFVHPALCRREQEIDEYI 416
VK +++WL P+ G+ +YR+++ P + + +ID +
Sbjct: 88 VKFAILVWLQFPSNSGAKHVYRRYMRPFFLKHQAKIDRIL 127
>09_06_0070 -
20670387-20670473,20672418-20672645,20673388-20673508,
20673604-20673702,20673802-20673833
Length = 188
Score = 82.6 bits (195), Expect = 2e-16
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Frame = +3
Query: 117 RLVILVFGTLYPAYASYKAVRTKN--LKEYVKWMMYWIVFALFTCTETFTDVFLSWFPFY 290
RL+ LV G YPAY YK + + + W YWI+ A T ET T +SW P Y
Sbjct: 8 RLLTLVLGYAYPAYDCYKTLELNKPQIDQLRFWCQYWILLAFLTTLETITYFTVSWLPMY 67
Query: 291 YXVKIVLVLWLLSPATKGSSILYRKFVHPALCRREQEIDEYI----AKAKD 431
K+ LVL+L P T+G+ +Y ++ P L R E +ID + A AKD
Sbjct: 68 GEAKLALVLYLWYPKTRGAKHVYESYLQPVLARHEADIDRGLLQLRASAKD 118
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 76.6 bits (180), Expect = 1e-14
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
Frame = +3
Query: 117 RLVILVFGTLYPAYASYKAVRTKN--LKEYVKWMMYWIVFALFTCTETFTDVFLSWFPFY 290
R +IL+ G YPAY YK V +++ W YWI+ A+ T E D F+SW P Y
Sbjct: 8 RALILILGYAYPAYDCYKTVELNRPEVEQLRFWCQYWILLAVLTVFERVGDNFVSWLPMY 67
Query: 291 YXVKIVLVLWLLSPAT---KGSSILYRKFVHPALCRREQEIDEYIAKAKDQGYHTVLNLG 461
K+ +++L P T +G+S +Y F P + + E EID + + + + ++
Sbjct: 68 SEAKLAFIVYLWYPKTQHFQGTSYVYESFFKPYIGKHEAEIDRNLLELRTRAGDMAVHYF 127
Query: 462 TKGVNYATT 488
K +Y+ T
Sbjct: 128 QKIADYSHT 136
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 74.1 bits (174), Expect = 8e-14
Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +3
Query: 147 YPAYASYKAVRTKNLKEYVKWMMYWIVFALFTCTE-TFTDVFLSWFPFYYXVKIVLVLWL 323
YP YAS KA+ TK+ + +W+ YW++++L T E TF + + W PF+ +K++ + WL
Sbjct: 26 YPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFELTFASI-IQWLPFWPSMKLIFICWL 84
Query: 324 LSPATKGSSILYRKFVHPALCRREQEIDEYIAKAK 428
+ P G++ +Y+ +V P + + Y+ + K
Sbjct: 85 VLPYFNGAAFVYQNYVRPMFVKHQMVNIWYVPQKK 119
>11_04_0392 +
17131839-17131943,17134182-17134258,17134385-17134411,
17134512-17134634,17134738-17134981,17135081-17135098
Length = 197
Score = 69.7 bits (163), Expect = 2e-12
Identities = 25/80 (31%), Positives = 47/80 (58%)
Frame = +3
Query: 144 LYPAYASYKAVRTKNLKEYVKWMMYWIVFALFTCTETFTDVFLSWFPFYYXVKIVLVLWL 323
LYP YAS +A+ + + + +W+ YWI+++ T E + + W P +Y +K++ + WL
Sbjct: 67 LYPLYASVQAMESPSKLDDEQWLAYWILYSFITLVEMLLESLIYWIPIWYELKLLFIAWL 126
Query: 324 LSPATKGSSILYRKFVHPAL 383
P +G++ +Y +FV L
Sbjct: 127 ALPNFRGAAFIYNRFVREQL 146
>06_01_0865 -
6571056-6571190,6571737-6571977,6572279-6572401,
6572501-6572527,6573954-6574009
Length = 193
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 147 YPAYASYKAVRTKNLKEYVKWMMYWIVFALFTCTE-TFTDVFLSWFPFYYXVKIVLVLWL 323
YP YAS +A+ TK+ + +W+ YW++++ T E TF V + W PF+ K+ WL
Sbjct: 26 YPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFELTFAPV-IEWLPFWSYAKLFFNCWL 84
Query: 324 LSPATKGSSILYRKFVHPALCRRE 395
+ P G++ +Y FV P R+
Sbjct: 85 VLPCFHGAAYVYDHFVRPMFVNRQ 108
>11_01_0354 +
2665570-2665601,2665796-2665894,2667158-2667202,
2667293-2667356,2667497-2667709,2669960-2670160
Length = 217
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +3
Query: 117 RLVILVFGTLYPAYASYKAVRTKNLKEYVK--WMMYWIVFALFTCTETFTDVFLSWFPFY 290
++++++FG PA+ +K + T+ ++ W YWI+ ++ E+F +SW P Y
Sbjct: 8 KVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACESF----VSWMPMY 63
Query: 291 YXVKIVLVLWLLSPATKGSSILYRKFVHPALCRREQEIDE 410
+K+ ++L P TKGS ++Y F+ P + + E I++
Sbjct: 64 GEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQ 103
>02_05_0743 +
31425827-31425888,31426733-31426759,31426840-31426962,
31427252-31427492,31427655-31427780
Length = 192
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = +3
Query: 147 YPAYASYKAVRTKNLKEYVKWMMYWIVFALFTCTE-TFTDVFLSWFPFYYXVKIVLVLWL 323
YP YAS +A+ TK+ + +W+ YW++++ T E TF+ V L W P + K+ WL
Sbjct: 28 YPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFSPV-LEWLPLWSYAKLFFNCWL 86
Query: 324 LSPATKGSSILYRKFVHPALCRREQEIDEYIAKAKDQ 434
+ P G++ +Y FV P + +Q ++ + KD+
Sbjct: 87 VLPYFNGAAHVYEHFVRPMVV-NQQIVNIWYIPRKDE 122
>09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416
Length = 98
Score = 63.3 bits (147), Expect = 1e-10
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +3
Query: 204 KWMMYWIVFALFTCTETFTDVFLSWFPFYYXVKIVLVLWLLSPATKGSSILYRKFVHPAL 383
+W++YWI+++L T E L W P +Y K++ V WL+ P +G+S +Y KFV L
Sbjct: 11 QWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASFIYDKFVREQL 70
Query: 384 CRREQEIDEY 413
+ ++ E+
Sbjct: 71 KKNRVKLHEH 80
>01_06_0575 - 30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/92 (30%), Positives = 51/92 (55%)
Frame = +3
Query: 144 LYPAYASYKAVRTKNLKEYVKWMMYWIVFALFTCTETFTDVFLSWFPFYYXVKIVLVLWL 323
LYP YAS +A+ + + + +W+ YW++++L T E L WFP + +K++ WL
Sbjct: 905 LYPLYASMRAIESPSTLDDQQWLTYWVLYSLITLFELSCWKVLQWFPLWPYMKLLFCCWL 964
Query: 324 LSPATKGSSILYRKFVHPALCRREQEIDEYIA 419
+ P G++ +Y V RR +I +Y++
Sbjct: 965 VLPIFNGAAYIYETHV-----RRYFKIGQYVS 991
>08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316
Length = 127
Score = 62.1 bits (144), Expect = 3e-10
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +3
Query: 204 KWMMYWIVFALFTCTETFTDVFLSWFPFYYXVKIVLVLWLLSPATKGSSILYRKFVHPAL 383
+W+ YWI+++ T E + L W P +Y VK++ V WL+ P KG+S +Y+K V L
Sbjct: 11 QWLAYWILYSFITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLPQFKGASFIYKKLVREQL 70
>12_01_0375 +
2930807-2930838,2930936-2930999,2931127-2931333,
2932385-2932458,2932831-2932858,2933268-2933456
Length = 197
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 270 LSWFPFYYXVKIVLVLWLLSPATKGSSILYRKFVHPALCRREQEIDE 410
+SW P Y +K+ ++L P TKGS ++Y F+ P + + E I++
Sbjct: 9 ISWMPMYGEIKLAFFVYLWYPKTKGSDVVYDTFLRPIVMQYEPNIEQ 55
>04_03_0882 +
20535238-20535269,20535406-20535486,20535847-20535903,
20535991-20536054,20536326-20536532,20536838-20536891,
20536933-20537052
Length = 204
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 132 VFGTLYPAYASYKAVRTK-NLKEYVKWMMYWIVFALFTCTETFTDVFLSWFPFYYXVKIV 308
+FG PA +KA+ + ++++ I+ + + V S P Y +++
Sbjct: 13 LFGYAMPALECFKAIEQRPGRTDHLR-----IILVILVIFDDIAGVLTSKIPMYSELRLA 67
Query: 309 LVLWLLSPATKGSSILYRKFVHPALCRREQEIDE 410
+++L P T+G+ I+Y F+ P + + + I+E
Sbjct: 68 FLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEE 101
>05_07_0052 +
27340499-27340597,27340708-27340801,27341206-27341415,
27341727-27342439
Length = 371
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 592 PSVTSRAWIACLAL---PSTPCSGLGRLKFLIAVCMMTVV 482
P VT W ACLAL P+T C +GR I V + ++
Sbjct: 146 PQVTGTVWEACLALNKVPTTNCVAIGRAMTQIGVYLKDIL 185
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 27.5 bits (58), Expect = 9.1
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Frame = +3
Query: 132 VFG-TLYPAYASYKAVRTKNLKEYVKWMM-YWI--VFALFTCTETFT-DVFLSWFPFYYX 296
VFG T+ + Y V + LK + WM W ++ L E FL F F Y
Sbjct: 446 VFGFTVEKVTSDYFEVSQETLKNTLVWMASIWNGGIYKLRVLAEGDDWTTFLKAFAFLYC 505
Query: 297 VKIVLVLWLLSPATKGSSILYRKFVHPALCRREQEIDEYIAKA 425
VK++L L + ++ F+ C E+EID +A A
Sbjct: 506 VKVMLNLQFRMLMGLVLAFMFVVFIVYEQC--EEEIDSLVAFA 546
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,051,455
Number of Sequences: 37544
Number of extensions: 352235
Number of successful extensions: 804
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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